View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-9 (Length: 143)
Name: Solexa-NF5870-9
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-9 |
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| [»] scaffold0075 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 45820658 - 45820577
Alignment:
| Q |
7 |
agaaacttgtgggcagtctgcaccatccatgttagaggatctttttcctcggtataggtatgtttcttgtttcctagtaatg |
88 |
Q |
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| T |
45820658 |
agaaacttgtgggcagtctgcaccatccatgttagaggatctgttttctcggtataggtatgtttcttgtttcctagtaatg |
45820577 |
T |
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Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 6539 - 6504
Alignment:
| Q |
88 |
gtttaaccagagtacaactggttttgaagcaggatc |
123 |
Q |
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| T |
6539 |
gtttaaccagagtacaactggttttgaagcaggatc |
6504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 11155 - 11120
Alignment:
| Q |
88 |
gtttaaccagagtacaactggttttgaagcaggatc |
123 |
Q |
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| T |
11155 |
gtttaaccagagtacaactggttttgaagcaggatc |
11120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 123
Target Start/End: Complemental strand, 5514 - 5487
Alignment:
| Q |
96 |
agagtacaactggttttgaagcaggatc |
123 |
Q |
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| T |
5514 |
agagtacaactggttttgaagcaggatc |
5487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 19984457 - 19984422
Alignment:
| Q |
88 |
gtttaaccagagtacaactggttttgaagcaggatc |
123 |
Q |
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| T |
19984457 |
gtttaaccagagtacaactggttttgaagcaggatc |
19984422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 19985943 - 19985910
Alignment:
| Q |
89 |
tttaaccagagtacaactggttttgaagcaggat |
122 |
Q |
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| T |
19985943 |
tttaaccaaagtacaactggttttgaagcaggat |
19985910 |
T |
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