View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-1 (Length: 244)
Name: Solexa-NF5871-1
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 24523388 - 24523631
Alignment:
| Q |
4 |
atgaagcgtcttaaagaaagagtgatattgtcgtgactcggcctata--caacttcaaaattattttttcaaaatagaatttggaactacgaagaataag |
101 |
Q |
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| T |
24523388 |
atgaagcatcttaaagaaagagtgatattgtcgtgactcaacctataaacaacttcaaaattattttt-caaaatagaatttggaaatacaaataactat |
24523486 |
T |
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| Q |
102 |
ttggaattcaacaacactcattgttaagatgaaacaatcatagg-ccaacaaaa-tgcttgttgacatctttatgaattgtgatcataaacctaaacttt |
199 |
Q |
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| T |
24523487 |
ttggaaatccaaaaccatcatttttaagatggaacaatcataattccaacaaaaatgcttgttgacatctttatgaattgtgatcataaacctaaacttt |
24523586 |
T |
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| Q |
200 |
tgatcctaagtactgcatatagacatttaggtgctactgctatat |
244 |
Q |
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| T |
24523587 |
tgatcctaagtactgcatatggacatttaggtgctactgctatat |
24523631 |
T |
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 9113271 - 9113356
Alignment:
| Q |
4 |
atgaagcgtcttaaagaaagagtgatattgtcgtgactcggcctat--acaacttcaaaattattttttcaaaatagaatttggaa |
87 |
Q |
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| T |
9113271 |
atgaagcgtcttaaagaaagagtgatattgtcgtgactcagcctataaacaacttcaaaattattttttcaaaatagaatttggaa |
9113356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 9122151 - 9122236
Alignment:
| Q |
4 |
atgaagcgtcttaaagaaagagtgatattgtcgtgactcggcctat--acaacttcaaaattattttttcaaaatagaatttggaa |
87 |
Q |
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| T |
9122151 |
atgaagcgtcttaaagaaagagtgatattgtcgtgactcaacctataaacaacttcaaaattattttttcaaaatagaatttggaa |
9122236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 9122298 - 9122362
Alignment:
| Q |
180 |
tgatcataaacctaaacttttgatcctaagtactgcatatagacatttaggtgctactgctatat |
244 |
Q |
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| T |
9122298 |
tgatcataaacctaaacttttgatcctaagtactgcatatggacatttaggtgctactgctatat |
9122362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 9113418 - 9113482
Alignment:
| Q |
180 |
tgatcataaacctaaacttttgatcctaagtactgcatatagacatttaggtgctactgctatat |
244 |
Q |
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| T |
9113418 |
tgatcataaacctaaaattttgatcctaagtactgcatatggacatttaggtgccactgctatat |
9113482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 9130411 - 9130458
Alignment:
| Q |
197 |
ttttgatcctaagtactgcatatagacatttaggtgctactgctatat |
244 |
Q |
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| T |
9130411 |
ttttgatcctaagtactgcatatggacatttaggtgctactgctatat |
9130458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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