View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-12 (Length: 156)
Name: Solexa-NF5871-12
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 6879255 - 6879139
Alignment:
| Q |
31 |
acaaaaagctaaaacagaacatcctcctttattaatcaaaaggaacaacaattaagccccaaaagaccatataaatcaaagatttagattaatattatga |
130 |
Q |
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| T |
6879255 |
acaaaaagctaaaacagaacatcctcctttattaatcaaaaggaacaacaattaag---------accatacaaatcaaagatttagattaatattgtga |
6879165 |
T |
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| Q |
131 |
tcattatgcaattatcttgaaattac |
156 |
Q |
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| T |
6879164 |
tcattatgcaattatcttgaaattac |
6879139 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6879297 - 6879261
Alignment:
| Q |
1 |
agacacaaatatagtaagttgccaaaggtgacaaaaa |
37 |
Q |
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| T |
6879297 |
agacacaaatatagtaagttgccaagggtgacaaaaa |
6879261 |
T |
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