View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-14 (Length: 151)
Name: Solexa-NF5871-14
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 10803145 - 10803282
Alignment:
| Q |
14 |
gaaaagaagaatctaagtgcaaaatcaattgagtaaatatagagcatgaataggcattgaacaatgtatttcaactatgaagctcattattgacatatat |
113 |
Q |
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| T |
10803145 |
gaaaagaagaatctaagtgcagaatcaattgagtaaatatagagcatgaataggcattgaacagtgtatttcaactatgaagctcattattgacatatat |
10803244 |
T |
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| Q |
114 |
tatattcatacacatttctacaaatttattaacacaac |
151 |
Q |
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| T |
10803245 |
tatattcatacacatttctacaaatttattaacacaac |
10803282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 10794091 - 10794142
Alignment:
| Q |
86 |
aactatgaagctcattattgacatatattatattcatacacatttctacaaa |
137 |
Q |
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| T |
10794091 |
aactatgaagctcattattgacatatattatattcatacacatttctacaaa |
10794142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 10794057 - 10794093
Alignment:
| Q |
39 |
caattgagtaaatatagagcatgaataggcattgaac |
75 |
Q |
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| T |
10794057 |
caattgagtaaatatagagcatgaatagggattgaac |
10794093 |
T |
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