View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5871-16 (Length: 151)
Name: Solexa-NF5871-16
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 55; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 17462016 - 17462078
Alignment:
| Q |
12 |
aagaagaaacttacaaatttccaaaagttgaaagagaaagttgacaaaacttttggttttggc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17462016 |
aagaagaaacttacaaatttccaaaagttgaaagagaaagttgaaaaagcttttggttttggc |
17462078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 17462065 - 17462108
Alignment:
| Q |
79 |
cttttggttttggctatgaatgaatgatagtttgaattaaagtc |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17462065 |
cttttggttttggctatgaatgaaggatagtttgaattaaagtc |
17462108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 17464182 - 17464225
Alignment:
| Q |
12 |
aagaagaaacttacaaatttccaaaagttgaaagagaaagttga |
55 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
17464182 |
aagaagaaacttacaaattctcataagttgaaagagaacgttga |
17464225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University