View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-18 (Length: 150)

Name: Solexa-NF5871-18
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-18
Solexa-NF5871-18
[»] chr4 (1 HSPs)
chr4 (11-107)||(11960478-11960575)
[»] chr1 (1 HSPs)
chr1 (34-100)||(19986512-19986579)
[»] chr7 (1 HSPs)
chr7 (10-107)||(45843212-45843310)
[»] chr5 (1 HSPs)
chr5 (46-104)||(39984714-39984773)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 11960478 - 11960575
Alignment:
Q  11 gcaaatataagtcacccgacggtaatctttattcaactaattgatttattttatcctgacaaattga-ttatgaatctaccaatttaaaaatactatc 107  Q
    ||||||||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  11960478 gcaaatataagtcactcaatggcaatctttattcaactaattgatttattttgtcctgacaaattgatttataaatctaccaatttaaaaatactatc 11960575  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 19986579 - 19986512
Alignment:
Q  34 aatctttattcaactaattgatttattttatcctgacaaattga-ttatgaatctaccaatttaaaaa 100  Q
    |||||||||| |||||| ||||||||||| |  ||||||||||| |||||||||||||||||||||||    
T  19986579 aatctttatttaactaactgatttattttgttatgacaaattgatttatgaatctaccaatttaaaaa 19986512  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 45843310 - 45843212
Alignment:
Q  10 agcaaatataagtcacccgacggtaatctttattcaactaattgatttattttatcctgacaaattga-ttatgaatctaccaatttaaaaatactatc 107  Q
    ||||||||||| ||||  ||| | ||||||||||||||||||||||||| |||   ||| ||| |||| || |||||||| ||||||||||||||||||    
T  45843310 agcaaatataaatcacttgacagcaatctttattcaactaattgatttactttggtctgccaagttgatttctgaatctatcaatttaaaaatactatc 45843212  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 39984773 - 39984714
Alignment:
Q  46 actaattgatttattttatcctgacaaattgatt-atgaatctaccaatttaaaaatact 104  Q
    ||||||||||||||||| |  |||||| |||||| ||| |||||||||||||||||||||    
T  39984773 actaattgatttattttgttttgacaatttgatttatgtatctaccaatttaaaaatact 39984714  T

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