View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-21 (Length: 145)
Name: Solexa-NF5871-21
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-21 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 9594646 - 9594589
Alignment:
| Q |
4 |
catagggaaaaacatcattaatgaaaaatattaatgcttgtgtagtcaaaacagacac |
61 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9594646 |
cataggcaaaaacatcattaatgaaaaatattaatgcttgtgtagtcaaaacagacac |
9594589 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 9594550 - 9594505
Alignment:
| Q |
100 |
atatatcattcataaagtaaagctaaaacataaagtcatcccacaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9594550 |
atatatcattcataaagtaaagctaaaacataaagtcatcccacaa |
9594505 |
T |
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