View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-24 (Length: 141)

Name: Solexa-NF5871-24
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-24
Solexa-NF5871-24
[»] chr5 (4 HSPs)
chr5 (2-140)||(11632918-11633056)
chr5 (2-140)||(13950023-13950162)
chr5 (13-48)||(3603694-3603729)
chr5 (94-138)||(3603790-3603834)
[»] chr8 (14 HSPs)
chr8 (2-140)||(10795597-10795735)
chr8 (2-141)||(39371398-39371537)
chr8 (2-140)||(41386090-41386230)
chr8 (2-139)||(40264507-40264643)
chr8 (2-140)||(41964815-41964952)
chr8 (12-141)||(7148759-7148888)
chr8 (2-140)||(43604593-43604732)
chr8 (12-139)||(9458232-9458360)
chr8 (5-140)||(29259498-29259639)
chr8 (19-140)||(2113513-2113635)
chr8 (2-140)||(4655792-4655930)
chr8 (94-140)||(43489604-43489650)
chr8 (7-46)||(43489714-43489753)
chr8 (58-85)||(42275713-42275740)
[»] chr3 (20 HSPs)
chr3 (2-140)||(30589561-30589699)
chr3 (2-140)||(36054242-36054381)
chr3 (3-137)||(24150060-24150194)
chr3 (3-140)||(35731591-35731727)
chr3 (2-140)||(38629041-38629181)
chr3 (2-140)||(26292793-26292933)
chr3 (2-140)||(26556575-26556715)
chr3 (6-140)||(2124932-2125068)
chr3 (12-140)||(26005092-26005223)
chr3 (12-140)||(19551395-19551527)
chr3 (94-140)||(23754228-23754274)
chr3 (94-140)||(23697652-23697698)
chr3 (94-140)||(23716108-23716154)
chr3 (94-140)||(23734564-23734610)
chr3 (95-140)||(50899749-50899794)
chr3 (7-46)||(23697762-23697801)
chr3 (7-46)||(23716217-23716256)
chr3 (7-46)||(23734673-23734712)
chr3 (7-46)||(23754335-23754374)
chr3 (57-85)||(50899706-50899734)
[»] chr7 (11 HSPs)
chr7 (2-140)||(27417880-27418019)
chr7 (2-139)||(152579-152715)
chr7 (2-140)||(30111508-30111647)
chr7 (12-140)||(43056910-43057039)
chr7 (2-140)||(35089329-35089468)
chr7 (2-140)||(47912959-47913100)
chr7 (2-140)||(47913553-47913694)
chr7 (94-140)||(12252752-12252798)
chr7 (94-140)||(33475210-33475256)
chr7 (7-75)||(12252652-12252720)
chr7 (7-44)||(33475319-33475356)
[»] chr6 (3 HSPs)
chr6 (6-140)||(3109586-3109720)
chr6 (16-139)||(29864989-29865113)
chr6 (2-140)||(6475975-6476116)
[»] chr2 (8 HSPs)
chr2 (2-140)||(6288779-6288917)
chr2 (2-140)||(45547631-45547769)
chr2 (2-140)||(42626632-42626773)
chr2 (2-140)||(29941606-29941753)
chr2 (94-140)||(7487468-7487514)
chr2 (7-47)||(21735887-21735927)
chr2 (94-140)||(21735989-21736035)
chr2 (7-48)||(35171651-35171692)
[»] scaffold0153 (1 HSPs)
scaffold0153 (2-140)||(34038-34178)
[»] scaffold0016 (1 HSPs)
scaffold0016 (2-140)||(81006-81146)
[»] chr4 (10 HSPs)
chr4 (6-140)||(42217674-42217808)
chr4 (2-140)||(8583233-8583372)
chr4 (2-85)||(3435050-3435133)
chr4 (94-140)||(56398724-56398770)
chr4 (12-48)||(7820756-7820792)
chr4 (97-139)||(3435294-3435336)
chr4 (94-140)||(42315594-42315640)
chr4 (12-48)||(42315672-42315708)
chr4 (12-48)||(56398829-56398865)
chr4 (57-85)||(44930476-44930504)
[»] chr1 (6 HSPs)
chr1 (2-140)||(52706111-52706251)
chr1 (2-140)||(26882048-26882187)
chr1 (2-140)||(45319187-45319329)
chr1 (7-48)||(14389212-14389253)
chr1 (12-140)||(45535481-45535609)
chr1 (94-140)||(14389104-14389150)
[»] scaffold0237 (1 HSPs)
scaffold0237 (18-139)||(20687-20808)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 3e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 11632918 - 11633056
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  11632918 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 11633017  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  11633018 gataatatactactagcaggttgattgatcttaaaaatt 11633056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 13950023 - 13950162
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc-nnnnnnnngactatt 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||          || |||    
T  13950023 acagaccaaaaaatctcaaaaacaaaagtacaattataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaaaccatt 13950122  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||| |||||||||| ||||||||| |||||||||    
T  13950123 agataatatgctactagcaggttgattgatcttaaaaatt 13950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 3603694 - 3603729
Alignment:
Q  13 aatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  3603694 aatctcaaaaacaaaagtacagttataaatcaaccg 3603729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 3603790 - 3603834
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaa 138  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||    
T  3603790 gactattagataatgtactactagcaggttgattgatcttaaaaa 3603834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 6e-35; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 10795597 - 10795735
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||        ||||||||    
T  10795597 acagaccaacaaatcacaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatccatgagtgtaatatttcttcaaaaaaaagactatta 10795696  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  10795697 gataatatactactagcaggttgattgatcttaaaaatt 10795735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 39371398 - 39371537
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  39371398 acagaccaaaaaatctcaaaaacaaaagtacagctataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 39371497  T
Q  102 gataatatactactagcagattgattgattttaaaaattt 141  Q
    ||||||||||||||||||| ||||||||| || |||||||    
T  39371498 gataatatactactagcaggttgattgatcttgaaaattt 39371537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 41386090 - 41386230
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg--nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactat 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||        ||||||    
T  41386090 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccggaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactat 41386189  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  41386190 tagataatatactactagcaggttgattgatcttaaaaatt 41386230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 40264507 - 40264643
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  40264507 acagaccaaaaaatctcaaaaacaaaagtacagttattaatcaaccg-aaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 40264605  T
Q  102 gataatatactactagcagattgattgattttaaaaat 139  Q
    |||||||||||||||||||||||||| || ||||||||    
T  40264606 gataatatactactagcagattgattaatcttaaaaat 40264643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 41964815 - 41964952
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||         |||||||    
T  41964815 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgtaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaa-actatta 41964913  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||| ||| ||||||||| |||||||||    
T  41964914 gataatatactactaacaggttgattgatcttaaaaatt 41964952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 7148888 - 7148759
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagataatatac 111  Q
    |||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||         ||||||||||||||||||    
T  7148888 aaatctcaaaaacaaaagtacagttataaatcaatcgaaaaaaaacattgaatcaatgagtgtaatatttcttaaaaaaaaagactattagataatatac 7148789  T
Q  112 tactagcagattgattgattttaaaaattt 141  Q
    ||||||||| ||||||||| ||||||||||    
T  7148788 tactagcaggttgattgatcttaaaaattt 7148759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 43604593 - 43604732
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnn-cattgaatcaatgagtgtaatatttcttcnnnnnnnngactatt 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||||||||||        |||||||    
T  43604593 acagaccaaaaaatctcaaaaacaaaaatacagttataaatcaatcgaaaacaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatt 43604692  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  43604693 agataatatactactagcaggttgattgatcttaaaaatt 43604732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 9458360 - 9458232
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttctt-cnnnnnnnngactattagataatata 110  Q
    |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||          |||||||||||||||||    
T  9458360 aaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaatattgaatcaatgagtgtaatatttcttaaaaaaaaaagactattagataatata 9458261  T
Q  111 ctactagcagattgattgattttaaaaat 139  Q
    |||||||||| ||| || || ||||||||    
T  9458260 ctactagcaggttggttaatcttaaaaat 9458232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 29259498 - 29259639
Alignment:
Q  5 gaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg---nnnnnnnncattgaatcaatgagtgtaatatttctt---cnnnnnnnngacta 98  Q
    |||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||            |||||    
T  29259498 gaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccggaaaaaaaaaacattgaatcaatgagtgtaatatttcttaaaaaaaaaaaagacta 29259597  T
Q  99 ttagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||| |||| ||||||||| |||||||||    
T  29259598 ttagataatatactactggcaggttgattgatcttaaaaatt 29259639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 2113635 - 2113513
Alignment:
Q  19 aaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnn-gactattagataatatactactag 117  Q
    ||||||||| ||||| ||||||||||||||        |||||||||||||||||||||||||||||         ||||||||||||||||| |||||     
T  2113635 aaaaacaaatgtacaattataaatcaaccggaaaaaaacattgaatcaatgagtgtaatatttcttccaaaaaaaagactattagataatatagtactaa 2113536  T
Q  118 cagattgattgattttaaaaatt 140  Q
    ||| ||||||||| |||||||||    
T  2113535 caggttgattgatcttaaaaatt 2113513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 4655930 - 4655792
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnn-cattgaatcaatgagtgtaatatttcttcnnnnnnnn-gactat 99  Q
    ||||||||| ||||||||||  |||||||| | ||||||||||||||         |||||||||||||||||||||||||||||         ||||||    
T  4655930 acagaccaaaaaatctcaaa--caaaagtaaaattataaatcaaccgaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaagactat 4655833  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  4655832 tagataatatactactagcaggttaattgatcttaaaaatt 4655792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 43489650 - 43489604
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  43489650 gactattagataatatactactagcaggttgattgatcttaaaaatt 43489604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 43489753 - 43489714
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaac 46  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  43489753 ccaaaaaatctcaaaaacaaaagtacagttataaatcaac 43489714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 85
Target Start/End: Complemental strand, 42275740 - 42275713
Alignment:
Q  58 attgaatcaatgagtgtaatatttcttc 85  Q
    ||||||||||||||||||||||||||||    
T  42275740 attgaatcaatgagtgtaatatttcttc 42275713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 6e-35; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 30589699 - 30589561
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    |||||| || |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  30589699 acagacaaaaaaatctcaaaaacaaaagtacagttataaatcaaccggaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 30589600  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  30589599 gataataaactactagcagattgattgatcttaaaaatt 30589561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 36054242 - 36054381
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||        |||||||    
T  36054242 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaacaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatt 36054341  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  36054342 agataatatactactagcaggttgattgatcttaaaaatt 36054381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 24150060 - 24150194
Alignment:
Q  3 cagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattag 102  Q
    ||||| || |||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||        |||||||||    
T  24150060 cagacaaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtataatatttcttcaaaaaaaagactattag 24150159  T
Q  103 ataatatactactagcagattgattgattttaaaa 137  Q
    |||||||||||||||||||||||||||| ||||||    
T  24150160 ataatatactactagcagattgattgatcttaaaa 24150194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 35731727 - 35731591
Alignment:
Q  3 cagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattag 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||        |||||||||    
T  35731727 cagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttc-aaaaaaagactattag 35731629  T
Q  103 ataatatactactagcagattgattgattttaaaaatt 140  Q
    |||| ||||||||||||| ||||||||| |||||||||    
T  35731628 ataaaatactactagcaggttgattgatcttaaaaatt 35731591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 38629041 - 38629181
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg--nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactat 99  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||        ||||||    
T  38629041 acagatcaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactat 38629140  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  38629141 tagataatatactactagcaggttgattgatcttaaaaatt 38629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 26292793 - 26292933
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg---nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngacta 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||        |||||    
T  26292793 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaaaaacattgaatcaatgagtgtaatatttcttc-aaaaaaagacta 26292891  T
Q  99 ttagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  26292892 ttagataatatactactagcaggttgattgatcttaaaaatt 26292933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 26556715 - 26556575
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc---nnnnnnnngacta 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||           |||||    
T  26556715 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccg-aaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaaagacta 26556617  T
Q  99 ttagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||| ||||||||||| ||||||||| |||||||||    
T  26556616 ttagataataaactactagcaggttgattgatcttaaaaatt 26556575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 2124932 - 2125068
Alignment:
Q  6 accaacaaatctcaaaaacaaaagtacagttataaatcaaccg--nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattaga 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||          ||||||||||||| |||||||||||||||        ||||||||||    
T  2124932 accaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaaaacattgaatcaatgtgtgtaatatttcttcaaaaaaaagactattaga 2125031  T
Q  104 taatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||  ||||||||| |||||||||    
T  2125032 taatatactactagcatgttgattgatcttaaaaatt 2125068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 26005092 - 26005223
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccg----nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagataat 107  Q
    ||||||||||||||||||||||||||||||||||| |            |||||||||||||||||||||||||||||        ||||||||||||||    
T  26005092 aaatctcaaaaacaaaagtacagttataaatcaactgaagaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactattagataat 26005191  T
Q  108 atactactagcagattgattgattttaaaaatt 140  Q
     |||||||||||| ||||||||| |||||||||    
T  26005192 -tactactagcaggttgattgatcttaaaaatt 26005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 19551395 - 19551527
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnn-----gactattagataa 106  Q
    |||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||             |||| ||||||||    
T  19551395 aaatctcaaaaacaaaagtatagttataaatcaaccgaaaaaaa-cattgaatcaatgagtgtaatatttcttcaaaaaaaaaaaaagactgttagataa 19551493  T
Q  107 tatactactagcagattgattgattttaaaaatt 140  Q
    ||||| |||||||| ||||||||| |||||||||    
T  19551494 tataccactagcaggttgattgatcttaaaaatt 19551527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 23754274 - 23754228
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  23754274 gactattagataatatactactagcaggttgattgatcttaaaaatt 23754228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 23697698 - 23697652
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  23697698 gactattagataatatactactagcatgttgattgatcttaaaaatt 23697652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 23716154 - 23716108
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  23716154 gactattagataatatactactagcatgttgattgatcttaaaaatt 23716108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 23734610 - 23734564
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  23734610 gactattagataatatactactagcatgttgattgatcttaaaaatt 23734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 50899749 - 50899794
Alignment:
Q  95 actattagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||||||||| || |||||| |||||||||    
T  50899749 actattagataatatactactagcaggttaattgatcttaaaaatt 50899794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 23697801 - 23697762
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaac 46  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  23697801 ccaaaaaatctcaaaaacaaaagtacagttattaatcaac 23697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 23716256 - 23716217
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaac 46  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  23716256 ccaaaaaatctcaaaaacaaaagtacagttattaatcaac 23716217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 23734712 - 23734673
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaac 46  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  23734712 ccaaaaaatctcaaaaacaaaagtacagttattaatcaac 23734673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 23754374 - 23754335
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaac 46  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  23754374 ccaaaaaatctcaaaaacaaaagtacagttattaatcaac 23754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 50899706 - 50899734
Alignment:
Q  57 cattgaatcaatgagtgtaatatttcttc 85  Q
    |||||||||||||||||||||||||||||    
T  50899706 cattgaatcaatgagtgtaatatttcttc 50899734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 4e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 27417880 - 27418019
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||        |||||||    
T  27417880 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaacaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatt 27417979  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  27417980 agataatatactactagcaggttgattgatcttaaaaatt 27418019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 152715 - 152579
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  152715 acagaccaaaaaatctcaaaaacaaaagtacagttattaatcaaccg-aaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 152617  T
Q  102 gataatatactactagcagattgattgattttaaaaat 139  Q
    |||||||||||||||||||||||||| || ||||||||    
T  152616 gataatatactactagcagattgattaatcttaaaaat 152579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 30111647 - 30111508
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||         |||||||    
T  30111647 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaacaaaacattgaatcaatgagtgtaatatttcttaaaaaaaaagactatt 30111548  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  30111547 agataatatactactagcaggttgattgatcttaaaaatt 30111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 43056910 - 43057039
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnn-cattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagataatata 110  Q
    |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||        |||||||||||||||||    
T  43056910 aaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactattagataatata 43057009  T
Q  111 ctactagcagattgattgattttaaaaatt 140  Q
    |||||||||| ||||||||| |||||||||    
T  43057010 ctactagcaggttgattgatcttaaaaatt 43057039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 35089329 - 35089468
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatt 100  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||         ||||||||||||||||||||| |||||||        |||||||    
T  35089329 acagaccaaaaaatctcaaaaataaaagtacagttataaatcaaccgaaaaaaaaacattgaatcaatgagtgtaatttttcttcaaaaaaaagactatt 35089428  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  35089429 agataatatactactagcagattgattaatcttaaaaatt 35089468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 47913100 - 47912959
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtg---taatatttcttcnnnnnnnngact 97  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||   ||||||||||||        ||||    
T  47913100 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaacaaaacattgaatcaatgagtgtaataatatttcttc-aaaaaaagact 47913002  T
Q  98 attagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  47913001 attagataatatactactagcaggttgattgatcttaaaaatt 47912959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 47913553 - 47913694
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg-nnnnnnnncattgaatcaatgagtg---taatatttcttcnnnnnnnngact 97  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||   ||||||||||||        ||||    
T  47913553 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaacaaaacattgaatcaatgagtgtaataatatttcttc-aaaaaaagact 47913651  T
Q  98 attagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  47913652 attagataatatactactagcaggttgattgatcttaaaaatt 47913694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 12252752 - 12252798
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  12252752 gactattagataatatactactagcaggttgattgatcttaaaaatt 12252798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 33475256 - 33475210
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  33475256 gactattagataatatactactagcaggttgattgatcttaaaaatt 33475210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 12252652 - 12252720
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgta 75  Q
    |||| |||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||    
T  12252652 ccaaaaaatctcaaaaacaaaagtacagttataaatcaatcgaaaaaaaacattgaatcaatgagtgta 12252720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 33475356 - 33475319
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatca 44  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  33475356 ccaaaaaatttcaaaaacaaaagtacagttataaatca 33475319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 3109586 - 3109720
Alignment:
Q  6 accaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagata 105  Q
    ||||| |||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||        ||||||||||||    
T  3109586 accaaaaaatctcaaaaacaaaagtacaattataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactattagata 3109685  T
Q  106 atatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||| || ||||||||||||||||    
T  3109686 atatactactagcaggtttattgattttaaaaatt 3109720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 29864989 - 29865113
Alignment:
Q  16 ctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnn-gactattagataatatactac 114  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  29864989 ctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaatattgaatcaatgagtgtaatatttcttcaaaaaaaaagactattagataatatactac 29865088  T
Q  115 tagcagattgattgattttaaaaat 139  Q
    |||||| ||||||||| ||||||||    
T  29865089 tagcaggttgattgatcttaaaaat 29865113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 6475975 - 6476116
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg--nnnnnnnncattgaatcaatgagtgtaatatttctt-cnnnnnnnngacta 98  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |          ||||||| ||||||||||||||||||||          |||||    
T  6475975 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaactgaaaaaaaaaacattgaaccaatgagtgtaatatttcttaaaaaaaaaagacta 6476074  T
Q  99 ttagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  6476075 ttagataatatactactagcaggttgattgatcttaaaaatt 6476116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 6288779 - 6288917
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||        ||||||||    
T  6288779 acagaccaaaaaatctcaaaaacaaaagtacaattataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 6288878  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||| || |||||| |||||||||    
T  6288879 gataatatactactagcaggttaattgatcttaaaaatt 6288917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 45547769 - 45547631
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactatta 101  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||        ||||||||    
T  45547769 acagaccaaaaaatctcaaaaacaaaagtacggttataaatcaaccgaaaaaaaatattgaatcaatgagtgtaatatttcttcaaaaaaaagactatta 45547670  T
Q  102 gataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  45547669 gataatatactactagcaggttgattgatcttaaaaatt 45547631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 42626632 - 42626773
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc---nnnnnnnngacta 98  Q
    |||||| || |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||           |||||    
T  42626632 acagacaaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaaagacta 42626731  T
Q  99 ttagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  42626732 ttagataatatactactagcaggttgattgatcttaaaaatt 42626773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 29941753 - 29941606
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccg----nnnnnnnncattgaatcaatgagtgtaatatttcttc-----nnnnnnn 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||                
T  29941753 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaaaa 29941654  T
Q  93 ngactattagataatatactactagcagattgattgattttaaaaatt 140  Q
     |||||||||||||||||||| |||||| ||||||||| |||||||||    
T  29941653 agactattagataatatactattagcaggttgattgatcttaaaaatt 29941606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 7487468 - 7487514
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  7487468 gactattagataatatactactagcaggttgattgatcttaaaaatt 7487514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 21735887 - 21735927
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaacc 47  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21735887 ccaaaaaatctcaaaaacaaaagtacagttataaatcaacc 21735927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 21735989 - 21736035
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||| |||||||||||||||||| ||||||||  |||||||||    
T  21735989 gactattatataatatactactagcaggttgattgagcttaaaaatt 21736035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 35171651 - 35171692
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    |||| |||||||||||||||||||||| |||||||| |||||    
T  35171651 ccaaaaaatctcaaaaacaaaagtacaattataaattaaccg 35171692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 34038 - 34178
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc--nnnnnnnngactat 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||          ||||||    
T  34038 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaagactat 34137  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  34138 tagataatatactactagcaggttgattgatcttaaaaatt 34178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 81006 - 81146
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc--nnnnnnnngactat 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||          ||||||    
T  81006 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaagactat 81105  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  81106 tagataatatactactagcaggttgattgatcttaaaaatt 81146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 4e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 42217674 - 42217808
Alignment:
Q  6 accaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagata 105  Q
    ||||| ||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||        ||||||||||||    
T  42217674 accaaaaaatctcaaaaacaaaagtacagttataaatcaacagaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactattagata 42217773  T
Q  106 atatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||  ||||||||| |||||||||    
T  42217774 atatactactagcatgttgattgatcttaaaaatt 42217808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 8583233 - 8583372
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnn--cattgaatcaatgagtgtaatatttcttcnnnnnnnngactat 99  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||          |||||||||||||||||||||||||||||        ||||||    
T  8583233 acagacaaaaaaatctcaaaaacaaaagtaca-ttataaatcaaccgaaaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaagactat 8583331  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  8583332 tagataatatactactaacaggttgattgatcttaaaaatt 8583372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 3435050 - 3435133
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc 85  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||    
T  3435050 acagatcaaaaaatctcaaaaacaaaagcacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttc 3435133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 56398770 - 56398724
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  56398770 gactattagataatatactactagcaggttgattgatcttaaaaatt 56398724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 7820792 - 7820756
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  7820792 aaatctcaaaaacaaaagtacagttataaatcaaccg 7820756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 3435294 - 3435336
Alignment:
Q  97 tattagataatatactactagcagattgattgattttaaaaat 139  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  3435294 tattagataatatactactagcaggttgattgatcttaaaaat 3435336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 42315640 - 42315594
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  42315640 gactattagataatacactactagcaggttgattgatcttaaaaatt 42315594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 42315708 - 42315672
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42315708 aaatctcaaaaacaaaagtacaattataaatcaaccg 42315672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 56398865 - 56398829
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    ||||||||||||||| |||||||||||||||||||||    
T  56398865 aaatctcaaaaacaagagtacagttataaatcaaccg 56398829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 44930504 - 44930476
Alignment:
Q  57 cattgaatcaatgagtgtaatatttcttc 85  Q
    |||||||||||||||||||||||||||||    
T  44930504 cattgaatcaatgagtgtaatatttcttc 44930476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 52706251 - 52706111
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttc--nnnnnnnngactat 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||          ||||||    
T  52706251 acagaccaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttcaaaaaaaaaagactat 52706152  T
Q  100 tagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||| ||||||||||| ||||||||| |||||||||    
T  52706151 tagataataaactactagcaggttgattgatcttaaaaatt 52706111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 26882048 - 26882187
Alignment:
Q  2 acagaccaacaaatctcaaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttctt-cnnnnnnnngactatt 100  Q
    |||||| || |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||          |||||||    
T  26882048 acagacaaaaaaatctcaaaaacaaaagtacagttataaatcaaccgaaaaaaaacattgaatcaatgagtgtaatatttcttaaaaaaaaaagactatt 26882147  T
Q  101 agataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||| |||||||||| ||||||||| |||||||||    
T  26882148 agataatatcctactagcaggttgattgatcttaaaaatt 26882187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 45319329 - 45319187
Alignment:
Q  2 acagaccaacaaatctcaaaaa-caaaagtacagttataaatcaaccg---nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngact 97  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||           |||||||||||| ||||||||||||||||        ||||    
T  45319329 acagaccaaaaaatctcaaaaaacaaaagtacagttataaatcaaccggaaaaaaaaaacattgaatcaataagtgtaatatttcttcaaaaaaaagact 45319230  T
Q  98 attagataatatactactagcagattgattgattttaaaaatt 140  Q
    ||||||||||| |||||||||| |||||||||| |||||||||    
T  45319229 attagataataaactactagcaaattgattgatcttaaaaatt 45319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 14389253 - 14389212
Alignment:
Q  7 ccaacaaatctcaaaaacaaaagtacagttataaatcaaccg 48  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  14389253 ccaaaaaatctcaaaaacaaaagtacagttataaatcaaccg 14389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 45535609 - 45535481
Alignment:
Q  12 aaatctcaaaaacaaaagtacagttataaatcaaccg---nnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagataata 108  Q
    |||||||||||||||||||||||||||||||||| ||           |||||||||||||||||||||||| ||||        ||||||||||||  |    
T  45535609 aaatctcaaaaacaaaagtacagttataaatcaatcggaaaaaaaaaacattgaatcaatgagtgtaatattacttc-aaaaaaagactattagata--a 45535513  T
Q  109 tactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||| ||||||||| |||||||||    
T  45535512 tactactagcaggttgattgatcttaaaaatt 45535481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 14389150 - 14389104
Alignment:
Q  94 gactattagataatatactactagcagattgattgattttaaaaatt 140  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||    
T  14389150 gactattagataatatactactagtaggttgattgatcttaaaaatt 14389104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 20687 - 20808
Alignment:
Q  18 caaaaacaaaagtacagttataaatcaaccgnnnnnnnncattgaatcaatgagtgtaatatttcttcnnnnnnnngactattagataatatactactag 117  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  20687 caaaaacaaaagtacagttataaatcaaccgaaaaaaaatattgaatcaatgagtgtaatatttcttcaaaaaaaagactattagataatatactactag 20786  T
Q  118 cagattgattgattttaaaaat 139  Q
    ||| ||||||||| ||||||||    
T  20787 caggttgattgatcttaaaaat 20808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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