View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-26 (Length: 141)
Name: Solexa-NF5871-26
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-26 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31321852 - 31321712
Alignment:
| Q |
1 |
cacagacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagc |
100 |
Q |
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| T |
31321852 |
cacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagc |
31321753 |
T |
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| Q |
101 |
agaagtatacaaattccaattctcacctggcgacaatgctc |
141 |
Q |
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| T |
31321752 |
agaagtatacaaattccaattctcacctggccacaatgctc |
31321712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31334105 - 31333965
Alignment:
| Q |
1 |
cacagacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagc |
100 |
Q |
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| T |
31334105 |
cacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagc |
31334006 |
T |
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| Q |
101 |
agaagtatacaaattccaattctcacctggcgacaatgctc |
141 |
Q |
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| T |
31334005 |
agaagtatacaaattccaattctcacctggccacaatgctc |
31333965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 31334737 - 31334768
Alignment:
| Q |
92 |
ttgatgagcagaagtatacaaattccaattct |
123 |
Q |
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| T |
31334737 |
ttgatgagtagaagtatacaaattccaattct |
31334768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39110507 - 39110404
Alignment:
| Q |
1 |
cacagacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagc |
100 |
Q |
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|||| ||| ||||||||| ||||||||||| || ||||| |||||||| ||||| || | ||||||| |||||||||||||| ||||||||||| || |
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| T |
39110507 |
cacacacatacaacccttttgcttcccaactttctccattctcatcaactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgc |
39110408 |
T |
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| Q |
101 |
agaa |
104 |
Q |
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|||| |
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| T |
39110407 |
agaa |
39110404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 33521128 - 33521232
Alignment:
| Q |
15 |
ccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaat |
114 |
Q |
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||||||||||||||| ||| |||||||||||||| | |||||||| ||| | | ||| || |||||||||||||| || |||||||| | ||||| || |
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| T |
33521128 |
ccttcagcttcccaattctgtccattttcatcaaccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatat |
33521227 |
T |
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| Q |
115 |
tccaa |
119 |
Q |
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||||| |
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| T |
33521228 |
tccaa |
33521232 |
T |
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