View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-29 (Length: 140)
Name: Solexa-NF5871-29
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 3307216 - 3307355
Alignment:
| Q |
1 |
aaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgttca |
100 |
Q |
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| T |
3307216 |
aaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgttca |
3307315 |
T |
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| Q |
101 |
agatgagattacctcggaggaggattatgagagtgcgggt |
140 |
Q |
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| T |
3307316 |
agatgagattgcctcggaggaggattatgagagtgtgggt |
3307355 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
19 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
61 |
Q |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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