View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-30 (Length: 140)

Name: Solexa-NF5871-30
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-30
Solexa-NF5871-30
[»] chr7 (12 HSPs)
chr7 (1-139)||(41760339-41760477)
chr7 (9-81)||(37928283-37928355)
chr7 (24-78)||(11736227-11736281)
chr7 (47-81)||(18221174-18221208)
chr7 (24-84)||(16685729-16685790)
chr7 (24-84)||(17659965-17660026)
chr7 (24-84)||(3624279-3624339)
chr7 (47-78)||(1703935-1703966)
chr7 (23-78)||(7833805-7833860)
chr7 (23-84)||(23142707-23142769)
chr7 (26-81)||(25530603-25530658)
chr7 (47-78)||(48984396-48984427)
[»] chr5 (3 HSPs)
chr5 (17-84)||(7319249-7319316)
chr5 (46-84)||(14044735-14044773)
chr5 (23-63)||(8435054-8435094)
[»] chr8 (5 HSPs)
chr8 (22-125)||(3137396-3137499)
chr8 (22-78)||(24757109-24757165)
chr8 (29-81)||(44648996-44649048)
chr8 (21-84)||(10029157-10029220)
chr8 (21-72)||(27162830-27162881)
[»] chr6 (3 HSPs)
chr6 (21-84)||(10008188-10008251)
chr6 (24-78)||(19418593-19418647)
chr6 (47-78)||(17900806-17900837)
[»] chr4 (6 HSPs)
chr4 (21-84)||(20775067-20775130)
chr4 (40-84)||(31152188-31152232)
chr4 (23-84)||(27284069-27284130)
chr4 (23-84)||(52837322-52837383)
chr4 (24-84)||(31647720-31647779)
chr4 (47-78)||(40161095-40161126)
[»] chr3 (7 HSPs)
chr3 (26-81)||(48338813-48338868)
chr3 (1-84)||(24344806-24344889)
chr3 (16-84)||(36436574-36436642)
chr3 (23-78)||(635766-635821)
chr3 (24-84)||(53818824-53818884)
chr3 (47-78)||(20585826-20585857)
chr3 (47-78)||(32961202-32961233)
[»] chr2 (6 HSPs)
chr2 (22-84)||(4978807-4978869)
chr2 (22-84)||(4996715-4996777)
chr2 (47-78)||(36622124-36622155)
chr2 (24-81)||(13738453-13738510)
chr2 (47-78)||(19606332-19606363)
chr2 (25-84)||(28331309-28331368)
[»] chr1 (4 HSPs)
chr1 (28-84)||(46295926-46295982)
chr1 (24-81)||(13969157-13969214)
chr1 (26-81)||(17169328-17169383)
chr1 (51-78)||(48502591-48502618)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 7e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 41760477 - 41760339
Alignment:
Q  1 atgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnnctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  41760477 atgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgataaaaaataaaaactta 41760378  T
Q  101 cattttcaagacataatttctatttttagtttccttaac 139  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  41760377 catttttaagacataatttctatttttagtttctttaac 41760339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 37928283 - 37928355
Alignment:
Q  9 tagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    |||||| ||| ||||||||||||| |||||||||  | |||| |||||| |||||||||||||||||||||||    
T  37928283 tagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactt 37928355  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 11736281 - 11736227
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 78  Q
    |||||||||||| ||||||  | ||||||||||||||||||| ||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagtggtgtaataatta 11736227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 18221208 - 18221174
Alignment:
Q  47 taagattttattaaaaagttgtgtaataattactt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  18221208 taagattttattaaaaagttgtgtaataattactt 18221174  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 16685729 - 16685790
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 84  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 16685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 17659965 - 17660026
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 84  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 17660026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 3624339 - 3624279
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||||| ||||   | ||||||||||||||||||| |||||||||||| |||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgat 3624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 1703966 - 1703935
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||||||||||||||||    
T  1703966 taagattttattaaaaagttgtgtaataatta 1703935  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 7833860 - 7833805
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||| ||||||  | ||||||||||||||||||| ||| ||||||||    
T  7833860 cattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataatta 7833805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 23142769 - 23142707
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaa-gttgtgtaataattacttgat 84  Q
    |||||||||| |||||||||  | |||| |||||| ||||| |||||||||||||||||||||    
T  23142769 cattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgat 23142707  T

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Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 25530658 - 25530603
Alignment:
Q  26 tggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    ||||| |||||||||||  |||||| |||||| ||||| ||||||||| |||||||    
T  25530658 tggttcagcatccaaaacaaataagtttttatgaaaaaattgtgtaatcattactt 25530603  T

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Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 48984396 - 48984427
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  48984396 taagattttattaaaaagtggtgtaataatta 48984427  T

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Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 7319249 - 7319316
Alignment:
Q  17 catggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7319249 catgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgat 7319316  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 14044773 - 14044735
Alignment:
Q  46 ataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14044773 ataagtttttataaaaaagttgtgtaataattacttgat 14044735  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 8435054 - 8435094
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaa 63  Q
    ||||||||||||||||||||  | |||||||||||||||||    
T  8435054 cattggttaagcatccaaaataagtaagattttattaaaaa 8435094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 3137396 - 3137499
Alignment:
Q  22 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattttcaagacataatttct 121  Q
    |||||||||| ||||||||||  |||||| || ||| ||||||||||||||||||||||||||            ||||||||||||||||| |||||||    
T  3137396 acattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttct 3137495  T
Q  122 attt 125  Q
    ||||    
T  3137496 attt 3137499  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 24757165 - 24757109
Alignment:
Q  22 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 78  Q
    |||||||||||||| | ||||   ||||||||||||||||||||  |||||||||||    
T  24757165 acattggttaagcagctaaaagagataagattttattaaaaagtgatgtaataatta 24757109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 44649048 - 44648996
Alignment:
Q  29 ttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    ||||||||||||||  |||||| ||| || ||||||||||||||| |||||||    
T  44649048 ttaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactt 44648996  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 10029157 - 10029220
Alignment:
Q  21 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||||||||||||||   | |||  |||||| |||||||||| |||| ||||||||||    
T  10029157 gacattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgat 10029220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 27162830 - 27162881
Alignment:
Q  21 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaa 72  Q
    ||||||||||||||||||||||  |  ||| |||||| ||||||||||||||    
T  27162830 gacattggttaagcatccaaaacaagcaagtttttataaaaaagttgtgtaa 27162881  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 10008188 - 10008251
Alignment:
Q  21 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||||||| ||||||  | |||| |||||||||||||| ||||||| ||||||||||    
T  10008188 gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgat 10008251  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 19418593 - 19418647
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 78  Q
    |||||||||||||||||||  | |||||||||||||||||||  |||||||||||    
T  19418593 attggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 17900837 - 17900806
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  17900837 taagattttattaaaaagtggtgtaataatta 17900806  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 20775067 - 20775130
Alignment:
Q  21 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||||||||||||||  | |||| |||||| |||||||| ||||||||||| |||||    
T  20775067 gacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgat 20775130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 31152232 - 31152188
Alignment:
Q  40 aaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  31152232 aaaagaataagattttattaaaaaattgtgttataattatttgat 31152188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 27284069 - 27284130
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||| |||||||||  |||||| |||||| ||||||||||| ||| |||| |||||    
T  27284069 cattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgat 27284130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 52837383 - 52837322
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||||||||||||  |  ||  |||||| ||||||||||||||||||||| ||||    
T  52837383 cattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgat 52837322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 31647720 - 31647779
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||||| ||||||  |||||| ||||||||||||||  |||||| ||||||||||    
T  31647720 attggttaagca-ccaaaagaaataagtttttattaaaaagtaatgtaattattacttgat 31647779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 40161126 - 40161095
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  40161126 taagattttattaaaaagtggtgtaataatta 40161095  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 48338813 - 48338868
Alignment:
Q  26 tggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    |||||||||||||||||  | |||| |||||| |||||||||||||||||||||||    
T  48338813 tggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactt 48338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24344806 - 24344889
Alignment:
Q  1 atgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||| ||||| ||| || ||||||||||||||  |||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  24344806 atgttaaacagtgtctcaggggcattggttaagcat-aaaaaagaagtaatatttaactaaaaagttgtgtaataattatttgat 24344889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 36436574 - 36436642
Alignment:
Q  16 tcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||| ||| |||||| |||| ||||  ||||||||||||||||||||| ||| |||||||| |||||    
T  36436574 tcatgggcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataattatttgat 36436642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 635821 - 635766
Alignment:
Q  23 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||||   ||||| ||||||| |||||||||||||| ||||    
T  635821 cattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcatta 635766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 53818824 - 53818884
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||| ||||||||||||||  |||||| ||| || |||||||||| |||| ||||||||||    
T  53818824 attgattaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgat 53818884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 20585826 - 20585857
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  20585826 taagattttattaaaaagtggtgtaataatta 20585857  T

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Target: chr3; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 32961202 - 32961233
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  32961202 taagattttattaaaaagtggtgtaataatta 32961233  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 4978869 - 4978807
Alignment:
Q  22 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4978869 acattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4978807  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 4996777 - 4996715
Alignment:
Q  22 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4996777 acattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4996715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 36622124 - 36622155
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||||||||||||||||    
T  36622124 taagattttattaaaaagttgtgtaataatta 36622155  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 13738510 - 13738453
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    |||||||||||||||||||  | |||| |||||| ||||| ||||||||| |||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactt 13738453  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 19606363 - 19606332
Alignment:
Q  47 taagattttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||| ||||||||||||    
T  19606363 taagattttattaaaaagtggtgtaataatta 19606332  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 28331368 - 28331309
Alignment:
Q  25 ttggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||||| |||||  | |||| |||||| ||| ||||||||||| ||||||||||    
T  28331368 ttggttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgat 28331309  T

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Target: chr1 (Bit Score: 33; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 46295982 - 46295926
Alignment:
Q  28 gttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 84  Q
    |||||||||||||||  |||||| |||||| |||||||||||| || ||||||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgat 46295926  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 13969214 - 13969157
Alignment:
Q  24 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    |||||||||||| ||||||  | |||| |||||| ||||| |||||||||||||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattactt 13969157  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 17169383 - 17169328
Alignment:
Q  26 tggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 81  Q
    |||||||||||| ||||  |||||| ||| || |||||||||| ||||||||||||    
T  17169383 tggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactt 17169328  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 78
Target Start/End: Original strand, 48502591 - 48502618
Alignment:
Q  51 attttattaaaaagttgtgtaataatta 78  Q
    ||||||||||||||||||||||||||||    
T  48502591 attttattaaaaagttgtgtaataatta 48502618  T

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