View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-33 (Length: 138)
Name: Solexa-NF5871-33
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 6e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2710744 - 2710881
Alignment:
| Q |
1 |
gaaccgcaaacacttgaatttcaaacgtctagcttttcaaatataaactatcaattattagttataaactagcttttcaactatcatctaagttataact |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
2710744 |
gaaccgcaaacacttgaatttcaacggtctagcttttcaaatataaactatcaattattagttataaactagcttttcaactatcaactaacttataact |
2710843 |
T |
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| Q |
101 |
taattttactaatcagagccttagtattcacagaaaaa |
138 |
Q |
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| T |
2710844 |
taattttactaatcagagccttagtattcacagaaaaa |
2710881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 43496819 - 43496894
Alignment:
| Q |
8 |
aaacacttgaatttcaaacgtctagcttttcaaatataaactatcaattattagttataaactagcttttcaacta |
83 |
Q |
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| T |
43496819 |
aaacactttaatttcaaaccgctagcttttcagctaaaagctttcaatcatcagctataagctagcttttcaacta |
43496894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 29050587 - 29050541
Alignment:
| Q |
63 |
tataaactagcttttcaactatcatctaagttataacttaattttac |
109 |
Q |
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| T |
29050587 |
tataagctagcttttcagctatcatctaacttataacttatttttac |
29050541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 22708112 - 22708210
Alignment:
| Q |
29 |
ctagcttttcaaatataaactatcaattattagttataaactagcttttcaactatcatctaagttataacttaattttactaatcagagccttagtat |
127 |
Q |
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| T |
22708112 |
ctagcttttcagctataagctatcagctatcagtcatcagctagcttttcagctatcagctagcttatagcttatttttaccaaacagagccttagtat |
22708210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 40675466 - 40675524
Alignment:
| Q |
63 |
tataaactagcttttcaactatcatctaagttataacttaattttactaatcagagcct |
121 |
Q |
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||||| |||| ||||||||||||| |||| ||||||||| ||||||||| |||||||| |
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| T |
40675466 |
tataagctagtttttcaactatcagctaacttataacttttttttactaaacagagcct |
40675524 |
T |
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