View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-36 (Length: 137)

Name: Solexa-NF5871-36
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-36
Solexa-NF5871-36
[»] chr3 (18 HSPs)
chr3 (35-137)||(24150554-24150656)
chr3 (39-137)||(26005581-26005679)
chr3 (35-137)||(26293289-26293391)
chr3 (39-137)||(36054733-36054831)
chr3 (41-137)||(38629528-38629624)
chr3 (35-137)||(19551880-19551982)
chr3 (38-133)||(50900172-50900267)
chr3 (40-137)||(35731192-35731289)
chr3 (71-137)||(46251961-46252027)
chr3 (58-137)||(13662808-13662887)
chr3 (71-137)||(26556057-26556123)
chr3 (39-137)||(30589099-30589198)
chr3 (71-137)||(27593412-27593478)
chr3 (75-137)||(39338062-39338123)
chr3 (58-137)||(36786231-36786309)
chr3 (100-137)||(26005770-26005807)
chr3 (35-78)||(23753871-23753914)
chr3 (71-137)||(52023961-52024023)
[»] chr8 (19 HSPs)
chr8 (39-137)||(7148300-7148398)
chr8 (39-137)||(41386596-41386694)
chr8 (35-137)||(41965522-41965624)
chr8 (40-137)||(42275232-42275330)
chr8 (35-133)||(43605086-43605184)
chr8 (39-137)||(2113051-2113149)
chr8 (39-137)||(29260002-29260100)
chr8 (35-137)||(40265003-40265105)
chr8 (41-137)||(4655307-4655403)
chr8 (35-119)||(41965320-41965404)
chr8 (75-137)||(10802533-10802595)
chr8 (71-137)||(37567130-37567196)
chr8 (58-137)||(4302551-4302632)
chr8 (71-137)||(30382432-30382498)
chr8 (58-133)||(28620108-28620183)
chr8 (78-137)||(8502892-8502951)
chr8 (78-137)||(40013264-40013323)
chr8 (92-137)||(9457803-9457848)
chr8 (78-137)||(35142302-35142361)
[»] chr7 (9 HSPs)
chr7 (39-137)||(43057407-43057505)
chr7 (39-137)||(47914055-47914153)
chr7 (39-137)||(30111063-30111161)
chr7 (35-137)||(152118-152220)
chr7 (39-131)||(35089832-35089924)
chr7 (39-137)||(27418368-27418466)
chr7 (58-133)||(40097358-40097434)
chr7 (75-133)||(39301018-39301077)
chr7 (40-78)||(33474810-33474848)
[»] chr6 (8 HSPs)
chr6 (39-137)||(6476439-6476537)
chr6 (58-137)||(30878112-30878191)
chr6 (71-137)||(10643770-10643836)
chr6 (92-137)||(29834064-29834109)
chr6 (92-137)||(29865498-29865543)
chr6 (71-137)||(3110043-3110109)
chr6 (35-68)||(29834037-29834070)
chr6 (35-68)||(29865471-29865504)
[»] chr5 (5 HSPs)
chr5 (35-137)||(40410850-40410952)
chr5 (71-137)||(6828549-6828616)
chr5 (78-137)||(17518689-17518748)
chr5 (78-137)||(10571371-10571430)
chr5 (43-78)||(3604214-3604249)
[»] scaffold0153 (1 HSPs)
scaffold0153 (39-137)||(34540-34638)
[»] scaffold0016 (1 HSPs)
scaffold0016 (39-137)||(81508-81606)
[»] chr4 (18 HSPs)
chr4 (39-137)||(8583731-8583829)
chr4 (35-137)||(44930135-44930237)
chr4 (39-137)||(42218172-42218270)
chr4 (35-137)||(7820306-7820409)
chr4 (35-137)||(3435685-3435781)
chr4 (58-137)||(26336328-26336407)
chr4 (71-137)||(45332926-45332992)
chr4 (71-137)||(45340616-45340682)
chr4 (77-137)||(8880704-8880764)
chr4 (71-133)||(52109670-52109732)
chr4 (71-137)||(42720979-42721046)
chr4 (71-137)||(40144020-40144086)
chr4 (71-137)||(47685404-47685470)
chr4 (78-137)||(33449944-33450003)
chr4 (71-137)||(54509971-54510038)
chr4 (58-137)||(25936047-25936127)
chr4 (40-78)||(56397732-56397770)
chr4 (43-78)||(42315188-42315223)
[»] chr2 (10 HSPs)
chr2 (39-137)||(29941205-29941303)
chr2 (44-137)||(6289232-6289325)
chr2 (39-137)||(45547191-45547289)
chr2 (58-137)||(20157502-20157581)
chr2 (58-137)||(34028677-34028756)
chr2 (59-137)||(24193232-24193310)
chr2 (71-137)||(11535095-11535161)
chr2 (62-137)||(11998167-11998241)
chr2 (78-137)||(24193816-24193875)
chr2 (43-78)||(35172398-35172433)
[»] chr1 (8 HSPs)
chr1 (40-137)||(26882553-26882650)
chr1 (35-137)||(45318720-45318822)
chr1 (1-134)||(52705656-52705789)
chr1 (58-137)||(1928149-1928228)
chr1 (71-137)||(29209015-29209081)
chr1 (71-137)||(36402507-36402573)
chr1 (71-133)||(10897064-10897126)
chr1 (92-135)||(45535046-45535089)
[»] scaffold0202 (1 HSPs)
scaffold0202 (58-137)||(16303-16384)
[»] scaffold0237 (1 HSPs)
scaffold0237 (92-137)||(21192-21237)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 1e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 24150554 - 24150656
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24150554 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacac 24150653  T
Q  135 taa 137  Q
    |||    
T  24150654 taa 24150656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 26005581 - 26005679
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26005581 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 26005679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 26293289 - 26293391
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||    
T  26293289 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacac 26293388  T
Q  135 taa 137  Q
    |||    
T  26293389 taa 26293391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 36054733 - 36054831
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  36054733 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 36054831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 38629528 - 38629624
Alignment:
Q  41 atttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||| |||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  38629528 atttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaa 38629624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 19551880 - 19551982
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||| ||||||||||||||||||||||| |||||  ||| ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  19551880 aaaaaaatttggaagagtattacaaaatctcaaggctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacac 19551979  T
Q  135 taa 137  Q
    |||    
T  19551980 taa 19551982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 50900172 - 50900267
Alignment:
Q  38 agaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    ||||||||||||||||||||||||| |||||   |||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  50900172 agaatttggaagagtattacaaaatctcaaggaaatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttaca 50900267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 35731289 - 35731192
Alignment:
Q  40 aatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||| |||||||||||||||||||| || | |||||||||||||    
T  35731289 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaa 35731192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 46251961 - 46252027
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46251961 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 46252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 13662887 - 13662808
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13662887 aaaatctcaaggttatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 13662808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 26556123 - 26556057
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 26556057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 30589198 - 30589099
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| | |||  |||||||||| || | |||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30589198 gaatttggaagagtattacaaaatctgaaggctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 30589099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 27593478 - 27593412
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  27593478 tatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 27593412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 39338062 - 39338123
Alignment:
Q  75 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  39338062 tgtgggagaca-aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 39338123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 36786309 - 36786231
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||  |||||||| |||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  36786309 aaaatctcaaggctatgtgtgagagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaa 36786231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 26005770 - 26005807
Alignment:
Q  100 ctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26005770 ctaggtgtgagattgttagtaggtacattttacactaa 26005807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 23753914 - 23753871
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    |||||||||||||||||||||||||||| | |||||| ||||||    
T  23753914 aaaagaatttggaagagtattacaaaatctaaagagtttgtgtg 23753871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 52023961 - 52024023
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||    | ||||||||||||||||| ||| ||||||||| |||||    
T  52023961 tatgtgtgggagacaaaaaagtct----gttaggtgtgagattgttactaggtacattttatactaa 52024023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 3e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 7148398 - 7148300
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7148398 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 7148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 41386596 - 41386694
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41386596 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 41386694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 41965522 - 41965624
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  41965522 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacac 41965621  T
Q  135 taa 137  Q
    |||    
T  41965622 taa 41965624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 42275330 - 42275232
Alignment:
Q  40 aatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagatt-gttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  42275330 aatttggaagagtattacaaaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaa 42275232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 43605086 - 43605184
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  43605086 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttaca 43605184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 2113149 - 2113051
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  2113149 gaatttggaagagtattacaaaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaa 2113051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 29260002 - 29260100
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||| ||||||||||||| |||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  29260002 gaatttggaatagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaa 29260100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 40265003 - 40265105
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||| ||||| ||||||||||||||| | |||  || |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40265003 aaaagattttggtagagtattacaaaatctaaaggctacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacac 40265102  T
Q  135 taa 137  Q
    |||    
T  40265103 taa 40265105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 4655403 - 4655307
Alignment:
Q  41 atttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||| ||||||| |||||  |||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  4655403 atttggaagagtatcacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaa 4655307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 41965320 - 41965404
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagt 119  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41965320 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 10802533 - 10802595
Alignment:
Q  75 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10802533 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 10802595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 37567130 - 37567196
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37567130 tatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 37567196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 4302551 - 4302632
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaa--gtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||  ||||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  4302551 aaaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 4302632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 30382432 - 30382498
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  30382432 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaa 30382498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 28620183 - 28620108
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    ||||| |||||  ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  28620183 aaaatctcaaggttatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtaca 28620108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 8502951 - 8502892
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  8502951 gggagacggaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaa 8502892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 40013264 - 40013323
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||| | |||||||||||||||||| || |||||| |||||    
T  40013264 gggagacagaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaa 40013323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 9457848 - 9457803
Alignment:
Q  92 tctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacattttacactaa 9457803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 35142361 - 35142302
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||| |||||||||  ||||||| ||||||| ||||||||| || ||||||||||||    
T  35142361 gggagaccgaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaa 35142302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 3e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 43057407 - 43057505
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43057407 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 43057505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 47914055 - 47914153
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47914055 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 47914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 30111161 - 30111063
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  30111161 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 30111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 152220 - 152118
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||| ||||| ||||||||||||||| | |||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  152220 aaaagattttggtagagtattacaaaatctaaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacac 152121  T
Q  135 taa 137  Q
    |||    
T  152120 taa 152118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 35089832 - 35089924
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacatttta 131  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  35089832 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacatttta 35089924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 27418368 - 27418466
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  | ||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27418368 gaatttggaagagtattacaaaatctcaaggctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 27418466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 40097434 - 40097358
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    ||||| |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  40097434 aaaatctcaagactatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttaca 40097358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 39301018 - 39301077
Alignment:
Q  75 tgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  39301018 tgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttaca 39301077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 33474848 - 33474810
Alignment:
Q  40 aatttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  33474848 aatttggaagagtattacaaaatctcaagagtttgtgtg 33474810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 3e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 6476439 - 6476537
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6476439 gaatttgaaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaa 6476537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 30878191 - 30878112
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  30878191 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaa 30878112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 10643770 - 10643836
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  10643770 tatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaa 10643836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 29834064 - 29834109
Alignment:
Q  92 tctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtacattttacactaa 29834109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 29865498 - 29865543
Alignment:
Q  92 tctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtacattttacactaa 29865543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 3110043 - 3110109
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||| |||||||||| ||  ||||||| |||||||| ||||  |||||||||||||||    
T  3110043 tatgtgtgggagatagaaaagtcttaatactaggtgcgagattgtcagtatgtacattttacactaa 3110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 29834037 - 29834070
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaag 68  Q
    |||||||||||||||||||||||||||| |||||    
T  29834037 aaaagaatttggaagagtattacaaaatctcaag 29834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 29865471 - 29865504
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaag 68  Q
    |||||||||||||||||||||||||||| |||||    
T  29865471 aaaagaatttggaagagtattacaaaatctcaag 29865504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 3e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 40410952 - 40410850
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  40410952 aaaagaatttggaaaagtattacaaaatttcaaggctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacac 40410853  T
Q  135 taa 137  Q
    |||    
T  40410852 taa 40410850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 6828549 - 6828616
Alignment:
Q  71 tatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||| ||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  6828549 tatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaa 6828616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 17518748 - 17518689
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  17518748 gggagacagaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaa 17518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 10571430 - 10571371
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  ||||||||| |||||    
T  10571430 gggagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaa 10571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 3604214 - 3604249
Alignment:
Q  43 ttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    |||||||||||||||||||| |||||||| ||||||    
T  3604214 ttggaagagtattacaaaatctcaagagtttgtgtg 3604249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 34540 - 34638
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34540 gaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 34638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 81508 - 81606
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  81508 gaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 81606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 6e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 8583731 - 8583829
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8583731 gaatttggaagagtattacaaaatctcaaggctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 8583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 44930237 - 44930135
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||| ||||||||||||||||||||||| |||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  44930237 aaaaaaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacac 44930138  T
Q  135 taa 137  Q
    |||    
T  44930137 taa 44930135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 42218172 - 42218270
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||| ||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42218172 gaatttggaagaatattacaaaatctcaaggctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 42218270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 7820409 - 7820306
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagag-tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    ||||||||||||||||||| ||||||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  7820409 aaaagaatttggaagagtaatacaaaatcccaagggctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttaca 7820310  T
Q  134 ctaa 137  Q
    ||||    
T  7820309 ctaa 7820306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 3435685 - 3435781
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||||||||||||||||| |||||  ||||      ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3435685 aaaagaatttggaagagtattacaaaatctcaaggctatg------agatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacac 3435778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 26336407 - 26336328
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26336407 aaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaa 26336328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 45332992 - 45332926
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45332992 tatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaa 45332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 45340682 - 45340616
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45340682 tatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaa 45340616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 8880764 - 8880704
Alignment:
Q  77 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8880764 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 8880704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 52109732 - 52109670
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  52109732 tatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttaca 52109670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 42721046 - 42720979
Alignment:
Q  71 tatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  42721046 tatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaa 42720979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 40144086 - 40144020
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  40144086 tatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaa 40144020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 47685470 - 47685404
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  47685470 tatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaa 47685404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 33449944 - 33450003
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||    
T  33449944 gggagacagaaaagtgttgaggctatgtgtgagattgttagtagatacattttacactaa 33450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 54510038 - 54509971
Alignment:
Q  71 tatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||||||||||||||    
T  54510038 tatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgttagtaggtacattttacactaa 54509971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 25936127 - 25936047
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagaca--gaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||| |||||||||||||||  |||||||||||||||||| ||||||||||||| ||| | |||||||||||||    
T  25936127 aaaatctcaagattatgtgtgggagacacagaaaagtctcaaggctag-tgtgagattgttaataggttcattttacactaa 25936047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 56397770 - 56397732
Alignment:
Q  40 aatttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  56397770 aatttggaagagtattacaaaatctcaagagtttgtgtg 56397732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 42315223 - 42315188
Alignment:
Q  43 ttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    |||||||||||||||||||| |||||||| ||||||    
T  42315223 ttggaagagtattacaaaatctcaagagtttgtgtg 42315188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 6e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 29941303 - 29941205
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29941303 gaatttggaagagtattacaaaatctcaaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 29941205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 6289232 - 6289325
Alignment:
Q  44 tggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6289232 tggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 6289325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 45547289 - 45547191
Alignment:
Q  39 gaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  45547289 gaatttggaagtgtattacaaaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 45547191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 20157502 - 20157581
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  20157502 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaa 20157581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 34028677 - 34028756
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34028677 aaaatctcaagactatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaa 34028756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 24193232 - 24193310
Alignment:
Q  59 aaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  24193232 aaatttcaagactatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaa 24193310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 11535161 - 11535095
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  11535161 tatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaa 11535095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 11998167 - 11998241
Alignment:
Q  62 tttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  11998167 tttcaaggctatgtgtgggagacaaaaaaatctcaaggct-ggtgtgagattgttggtagatacattttacactaa 11998241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 24193875 - 24193816
Alignment:
Q  78 gggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||||||||  |||||| |||||||||||||||||| |||||||||||||||    
T  24193875 gggagacagaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaa 24193816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 35172398 - 35172433
Alignment:
Q  43 ttggaagagtattacaaaatttcaagagtatgtgtg 78  Q
    |||||||||||||||||||| |||||||| ||||||    
T  35172398 ttggaagagtattacaaaatctcaagagtttgtgtg 35172433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 26882553 - 26882650
Alignment:
Q  40 aatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||||||||||| |||||  |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26882553 aatttggaagagtattacaaaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaa 26882650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 45318822 - 45318720
Alignment:
Q  35 aaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacac 134  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  45318822 aaaagaatttggaagagtattacaaaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacac 45318723  T
Q  135 taa 137  Q
    |||    
T  45318722 taa 45318720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52705789 - 52705656
Alignment:
Q  1 acagaaatgaatttggaagaaacgtnnnnnnnngaaaagaatttggaagagtattacaaaatttcaagagtatgtgtgggagacagaaaagtctcaaggc 100  Q
    ||||||| |||||||||||||||||         ||| ||||||||||||||||||||| || |||||  ||||||||||||| |||||||||| |||||    
T  52705789 acagaaaagaatttggaagaaacgtagaaaaaaaaaatgaatttggaagagtattacaatatctcaaggctatgtgtgggagatagaaaagtcttaaggc 52705690  T
Q  101 taggtgtgagattgttagtagatacattttacac 134  Q
    |||| |||||||||||||||  ||||||||||||    
T  52705689 taggcgtgagattgttagtaagtacattttacac 52705656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 1928149 - 1928228
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  1928149 aaaatctcaagactatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaa 1928228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 29209081 - 29209015
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  29209081 tatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaa 29209015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 36402573 - 36402507
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  36402573 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaa 36402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 10897126 - 10897064
Alignment:
Q  71 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagatacattttaca 133  Q
    |||||||| |||||| |||||| |||||| ||||||||||||||||||||| |||||||||||    
T  10897126 tatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttaca 10897064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 45535089 - 45535046
Alignment:
Q  92 tctcaaggctaggtgtgagattgttagtagatacattttacact 135  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  45535089 tctcaaggctacgtgtgagattgttagtaggtacattttacact 45535046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 16303 - 16384
Alignment:
Q  58 aaaatttcaagagtatgtgtgggagacagaaaagtctcaaggcta--ggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||||||  |||||||| |||||| ||||||||||||| ||  ||||||||||||||||||| |||| ||||||||||    
T  16303 aaaatttcaaggctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtacactttacactaa 16384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 21192 - 21237
Alignment:
Q  92 tctcaaggctaggtgtgagattgttagtagatacattttacactaa 137  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtacattttacactaa 21237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University