View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-4 (Length: 178)

Name: Solexa-NF5871-4
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-4
Solexa-NF5871-4
[»] chr4 (1 HSPs)
chr4 (8-178)||(48432088-48432258)
[»] chr3 (5 HSPs)
chr3 (62-145)||(1923872-1923955)
chr3 (92-160)||(53285655-53285723)
chr3 (88-160)||(54139415-54139487)
chr3 (8-62)||(52808419-52808473)
chr3 (79-154)||(52808538-52808613)
[»] chr1 (3 HSPs)
chr1 (76-155)||(23651055-23651134)
chr1 (76-153)||(23619710-23619787)
chr1 (76-153)||(23736489-23736566)
[»] chr6 (1 HSPs)
chr6 (92-160)||(11844037-11844105)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 1e-82; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 48432088 - 48432258
Alignment:
Q  8 attatgtcatacctggacgtcaccaacatcagcagtatgatgaacaattgattcagaagcagctactactccagagtttggaggaatgcccaaggcttgt 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  48432088 attatgtcatacctggacgtcaccaacatcagcagtatcatgaacaattgattcagaagcagctactactccagagtttagaggaatccccaaggcttgt 48432187  T
Q  108 cccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatcattcataaactatctacca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48432188 cccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatcattcagaaactatctacca 48432258  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 1923955 - 1923872
Alignment:
Q  62 agaagcagctactactccagagtttggaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatct 145  Q
    |||||||||| |  |||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  1923955 agaagcagctgcatctccagaagttggaggaatgcccatggctagtcccaacttcttcaaaacctcctcatcattccagtatct 1923872  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 53285723 - 53285655
Alignment:
Q  92 aatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatca 160  Q
    |||||||| | || |||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  53285723 aatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatca 53285655  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 54139487 - 54139415
Alignment:
Q  88 gaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatca 160  Q
    |||||||||||| | |  |||| ||| | |||||||||| |||||||||||||||||||||||||||| ||||    
T  54139487 gaggaatgcccatgaccagtccaaacattttcaaaaccttctcatcattccagtatctgcatggaaagaatca 54139415  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 52808419 - 52808473
Alignment:
Q  8 attatgtcatacctggacgtcaccaacatcagcagtatgatgaacaattgattca 62  Q
    |||||| ||||||| |||||| ||||||| |||||||||||||| ||||||||||    
T  52808419 attatgccatacctcgacgtcgccaacattagcagtatgatgaataattgattca 52808473  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 52808538 - 52808613
Alignment:
Q  79 cagagtttggaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaa 154  Q
    |||||| ||||  |||||||| |||| |||| ||| |||||||||  | ||||||||||||||||||||| |||||    
T  52808538 cagagtatggaataatgcccatggctagtccaaacatcttcaaaatattctcatcattccagtatctgcaaggaaa 52808613  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 23651055 - 23651134
Alignment:
Q  76 ctccagagtttggaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaag 155  Q
    ||||| ||| |||| ||||||||| | || |||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  23651055 ctccaaagtatggacgaatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaaag 23651134  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 23619710 - 23619787
Alignment:
Q  76 ctccagagtttggaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaa 153  Q
    ||||| ||| |||| ||||||||| | || |||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  23619710 ctccaaagtatggacgaatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaa 23619787  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 23736489 - 23736566
Alignment:
Q  76 ctccagagtttggaggaatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaa 153  Q
    ||||| ||| |||| ||||||||| | || |||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  23736489 ctccaaagtatggacgaatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaa 23736566  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 11844037 - 11844105
Alignment:
Q  92 aatgcccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatca 160  Q
    |||||||| | || |||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  11844037 aatgcccatgactagtccaaacatcttcaaaacccactcatcattccagtatctgcatggaaagaatca 11844105  T

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