View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-42 (Length: 130)
Name: Solexa-NF5871-42
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-42 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 41010317 - 41010195
Alignment:
| Q |
7 |
aataactgccctgctataataagtttgagaacgttgttcctttctggagttaatttattaataggtaaagggaagcatcaagtggaaaagctagaaaaat |
106 |
Q |
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| T |
41010317 |
aataactgccctgctataataagtttgagaacgttgttcctttctggagttaatttattaataggtaaagggaagcatcaagtggaaaagctagaaaaat |
41010218 |
T |
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| Q |
107 |
aatttcgttcatagtttttgatc |
129 |
Q |
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| T |
41010217 |
aatttcgttcatagttttagatc |
41010195 |
T |
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