View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-43 (Length: 128)
Name: Solexa-NF5871-43
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-43 |
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| [»] scaffold0151 (1 HSPs) |
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Alignment Details
Target: scaffold0151 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 20504 - 20384
Alignment:
| Q |
8 |
gccacaactgctgctcaaactggtgccaaggttagtttcannnnnnnnnnnnnnnnaactacgctatttaagagcagttgcattaatggagtaatttgtg |
107 |
Q |
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| T |
20504 |
gccacaactgctgctcaaactggtgccaaggttcgtttcattttttttatttttttaactacgctatttaagagcagttgcattaatggagtaatttgtg |
20405 |
T |
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| Q |
108 |
atgtcctgtatcatagtctaa |
128 |
Q |
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||||||||||||||||||||| |
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| T |
20404 |
atgtcctgtatcatagtctaa |
20384 |
T |
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