View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-44 (Length: 128)
Name: Solexa-NF5871-44
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 3307594 - 3307474
Alignment:
| Q |
8 |
aaaatgatccattcatgcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattgaactcataacttgaaccttgca |
107 |
Q |
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| T |
3307594 |
aaaatgatccattcattcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattaaactcataacttgaaccttgca |
3307495 |
T |
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| Q |
108 |
ctttgtgttatttctaagtga |
128 |
Q |
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|| |||||||||||||||||| |
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| T |
3307494 |
ctctgtgttatttctaagtga |
3307474 |
T |
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