View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-49 (Length: 127)
Name: Solexa-NF5871-49
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-49 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 31256020 - 31255902
Alignment:
| Q |
7 |
aataatttaatttgtaggtaagtaattacaagtgagtttcttcttttttggcacccgaatttacatgtataataattaataattgatgaattcgcgacac |
106 |
Q |
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| T |
31256020 |
aataatttaatttgtaggtaagtaattacaagtgagtttcttctttt--ggcacccgaatttacatgtataataattaataattgatgaattcgtgacac |
31255923 |
T |
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| Q |
107 |
aataaatattttcgatctagt |
127 |
Q |
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| T |
31255922 |
aataaatatttttgatctagt |
31255902 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 31237596 - 31237550
Alignment:
| Q |
7 |
aataatttaatttgtaggtaagtaattacaagtgagtttcttctttt |
53 |
Q |
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|||||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
31237596 |
aataatttaatttgctgctaagtaattacaagcgagtttcttctttt |
31237550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 31246967 - 31246921
Alignment:
| Q |
7 |
aataatttaatttgtaggtaagtaattacaagtgagtttcttctttt |
53 |
Q |
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|||||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
31246967 |
aataatttaatttgctgctaagtaattacaagcgagtttcttctttt |
31246921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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