View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-50 (Length: 126)
Name: Solexa-NF5871-50
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-50 |
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| [»] scaffold0151 (1 HSPs) |
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Alignment Details
Target: scaffold0151 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 19980 - 20105
Alignment:
| Q |
1 |
cagagataatcagaagctacatctcctataatgcctccttcttccccaagaataagatgatcttcaaaattcttcttcaccacttctaatatggcagttt |
100 |
Q |
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| T |
19980 |
cagagataatcggaagctacatctcctataatgcctccttcttccccaagaataagatgatcttcaaaattcttcttcaccacttctaatatggcagctt |
20079 |
T |
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| Q |
101 |
cactcattttatccgtcctgtaaatt |
126 |
Q |
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| T |
20080 |
cactcattttatccgtcctgtaaatt |
20105 |
T |
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