View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-52 (Length: 123)
Name: Solexa-NF5871-52
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-52 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 4e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 4e-57
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 31321374 - 31321489
Alignment:
| Q |
8 |
actaggaccatcatcatttgcatcaatatatccatgggaatcaggacttgacttcaaacaaagaatgataaaatatccaagaacagcacacttaatcaca |
107 |
Q |
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| T |
31321374 |
actaggaccatcatcatttgcatcaatatatccatgggaatcaggacttgacttcaaacaaagaatgctaaaatatccaagaacagcacacttaatcaca |
31321473 |
T |
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| Q |
108 |
ataataagagacaaag |
123 |
Q |
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| T |
31321474 |
ataataagagacaaag |
31321489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 31333627 - 31333742
Alignment:
| Q |
8 |
actaggaccatcatcatttgcatcaatatatccatgggaatcaggacttgacttcaaacaaagaatgataaaatatccaagaacagcacacttaatcaca |
107 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||| || || ||| |
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| T |
31333627 |
actaggaccatcatcattttcagcactatatccatgggaatcaggactggactacaaacaaagaatgctaaattatccaagaacagcacatttcataaca |
31333726 |
T |
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| Q |
108 |
ataataagagacaaag |
123 |
Q |
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| T |
31333727 |
ataataagagacaaag |
31333742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 76; Significance: 1e-35; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 2297 - 2182
Alignment:
| Q |
8 |
actaggaccatcatcatttgcatcaatatatccatgggaatcaggacttgacttcaaacaaagaatgataaaatatccaagaacagcacacttaatcaca |
107 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||| || || ||| |
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| T |
2297 |
actaggaccatcatcattttcagcactatatccatgggaatcaggactggactacaaacaaagaatgctaaattatccaagaacagcacatttcataaca |
2198 |
T |
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| Q |
108 |
ataataagagacaaag |
123 |
Q |
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|||||||||||||||| |
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| T |
2197 |
ataataagagacaaag |
2182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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