View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-53 (Length: 121)
Name: Solexa-NF5871-53
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-53 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 17462614 - 17462508
Alignment:
| Q |
15 |
catacggaaagatattacttacccttcattcttgtcaaacataatgtctttaagataaaaaatggatcttggttaataatatttttatataaacacacta |
114 |
Q |
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| T |
17462614 |
catatggaaagatattacctaccctttattcttgtcaaacataatgtttttaagataaaaaatggatcttggttaataatatttttatataaacacacta |
17462515 |
T |
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| Q |
115 |
taaaaag |
121 |
Q |
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| T |
17462514 |
taaaaag |
17462508 |
T |
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Target: chr6; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 17463851 - 17463765
Alignment:
| Q |
23 |
aagatattacttacccttcattcttgtcaaacataatgtctttaagataaaaaatggatcttggttaataatatttttatataaaca |
109 |
Q |
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| T |
17463851 |
aagattttacttaccattaattcttatcaaacataatgttttttagataaaaaatggatcttcgttaataatatttttagataaaca |
17463765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 17461685 - 17461606
Alignment:
| Q |
31 |
acttacccttcattcttgtcaaacataatgtctttaagataaaaaa-tggatcttggttaataatatttttatataaaca |
109 |
Q |
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| T |
17461685 |
acttacccttcgtttgtgtcaaacataatgttttttagataaaaaaatggatcttggttaacaatacttttagataaaca |
17461606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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