View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-59 (Length: 115)
Name: Solexa-NF5871-59
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-59 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 1e-54; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 24987858 - 24987965
Alignment:
| Q |
8 |
aaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatactacaaaaaattaaaataacatgaaacttaattagtacacaaaatca |
107 |
Q |
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| T |
24987858 |
aaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatactacaaaaaattaaaataacatgaaacttaattagtacacaaaatca |
24987957 |
T |
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| Q |
108 |
aatctcta |
115 |
Q |
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|||||||| |
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| T |
24987958 |
aatctcta |
24987965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 25048505 - 25048575
Alignment:
| Q |
8 |
aaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatactacaaaaaattaaaata |
78 |
Q |
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| T |
25048505 |
aaagtatcccaaatacttggtccttttccatctttttttgctgcaccttcatactataaaaaattcaaata |
25048575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24999248 - 24999176
Alignment:
| Q |
11 |
gtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatactacaaaaaattaaaataacatgaaa |
86 |
Q |
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| T |
24999248 |
gtatcccatatacttggtccttttccaccttctcttactgcaccttcatact---aaaaattcaaataacatgaaa |
24999176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 25169300 - 25169349
Alignment:
| Q |
11 |
gtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata |
60 |
Q |
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| T |
25169300 |
gtatcccaaatacttggtcctcttccaccttcacttgctgcaccttcata |
25169349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25181085 - 25181137
Alignment:
| Q |
8 |
aaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata |
60 |
Q |
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| T |
25181085 |
aaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcata |
25181137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 25251957 - 25251905
Alignment:
| Q |
8 |
aaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata |
60 |
Q |
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| T |
25251957 |
aaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcata |
25251905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7727792 - 7727741
Alignment:
| Q |
11 |
gtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatact |
62 |
Q |
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|||||||| |||||||| ||||| ||| ||||| ||||||||||||||||| |
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| T |
7727792 |
gtatcccatatacttggccctttgccaccttcatgtgctgcaccttcatact |
7727741 |
T |
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