View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5871-6 (Length: 172)
Name: Solexa-NF5871-6
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5871-6 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 5e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 10113835 - 10113675
Alignment:
| Q |
8 |
tgtcaaaaaggttatatgacctgtctctttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatg |
107 |
Q |
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| T |
10113835 |
tgtcaaaaaggttatatgacctgtctttttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatg |
10113736 |
T |
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| Q |
108 |
gattaaccaaatctcagtattatacatacataaaatatttaaatagttatatagtgttcat |
168 |
Q |
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| T |
10113735 |
gattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
10113675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 10250938 - 10250778
Alignment:
| Q |
8 |
tgtcaaaaaggttatatgacctgtctctttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatg |
107 |
Q |
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| T |
10250938 |
tgtcaaaaaggttatatgacctgtctttttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatg |
10250839 |
T |
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| Q |
108 |
gattaaccaaatctcagtattatacatacataaaatatttaaatagttatatagtgttcat |
168 |
Q |
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| T |
10250838 |
gattaaccaaatctcagtattatacatacataaaatatttaaatatttatatagtgttcat |
10250778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 10014213 - 10014080
Alignment:
| Q |
35 |
tttggatgaaacaaaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatggattaaccaaatctcagtattatacat |
134 |
Q |
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| T |
10014213 |
tttggatgaaacagaataatattctaacaaccagtggcggatcttgctcatgagcagcgaaaatttaaaaatggattaaccaaatctcagtattatacat |
10014114 |
T |
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| Q |
135 |
acataaaatatttaaatagttatatagtgttcat |
168 |
Q |
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| T |
10014113 |
acataaaatatttaaatatttatatagtgttcat |
10014080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 4e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 16014624 - 16014794
Alignment:
| Q |
8 |
tgtcaaaaaggttatatgacctgtctctttggatgaaacaaaataatattctaacaaccagtggcggatcttgctca----------tgagcagcgaaaa |
97 |
Q |
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| T |
16014624 |
tgtcaaaaaggttatatgacctgtctttttcgatcaaacagaataatattctaacaaccagtggcggatcttgctcaaatattagggtgagcagcgaaaa |
16014723 |
T |
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| Q |
98 |
tttaaaaatggattaaccaaatctcagtattatacatacataaaatatttaaatagttatatagtgttcat |
168 |
Q |
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| T |
16014724 |
cttaaaaatggattaaccaaatctctgtattatacatacataaaatatttaaatatttatgtagtgttcat |
16014794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 21403126 - 21402971
Alignment:
| Q |
8 |
tgtcaaaaaggttatatgacctgtctctttggatgaaac-aaaataatattctaacaaccagtggcggatcttgctca-----------tgagcagcgaa |
95 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||| ||||||||||||||||| |||| || ||| |
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| T |
21403126 |
tgtcaaaaaggttatatgacctgtctttttggatcaaacggaattaatattctaacaaccggtggcggatcttgctcaaaatattaggttgaggagggaa |
21403027 |
T |
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| Q |
96 |
aatttaaaaatggattaaccaaatctcagtattatacatacataaaatatttaaat |
151 |
Q |
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|| ||||||||||||||||||||| || ||||||||||||||||| |||||||||| |
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| T |
21403026 |
aacttaaaaatggattaaccaaatatctgtattatacatacataacatatttaaat |
21402971 |
T |
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