View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5871-60 (Length: 111)

Name: Solexa-NF5871-60
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5871-60
Solexa-NF5871-60
[»] chr6 (1 HSPs)
chr6 (3-111)||(9412430-9412535)
[»] chr3 (1 HSPs)
chr3 (44-91)||(51120325-51120372)
[»] chr1 (1 HSPs)
chr1 (39-98)||(7561332-7561391)
[»] chr7 (1 HSPs)
chr7 (49-86)||(10616209-10616246)
[»] chr4 (4 HSPs)
chr4 (42-91)||(554097-554146)
chr4 (46-87)||(566754-566795)
chr4 (40-92)||(642341-642393)
chr4 (46-93)||(1488821-1488868)
[»] chr2 (1 HSPs)
chr2 (44-93)||(45244521-45244570)
[»] chr5 (3 HSPs)
chr5 (49-89)||(41886296-41886336)
chr5 (47-90)||(29022133-29022176)
chr5 (49-92)||(41900191-41900234)
[»] chr8 (1 HSPs)
chr8 (46-93)||(17642611-17642658)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 9412535 - 9412430
Alignment:
Q  3 aagaagacgaaaaacaacaacggttgtttctgccgatgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaaccatggtgct 102  Q
    ||||||||||||||||||||||||||||  ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9412535 aagaagacgaaaaacaacaacggttgttgttgccgatg---atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatggtgct 9412439  T
Q  103 aaccatcgc 111  Q
    ||| |||||    
T  9412438 aactatcgc 9412430  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 51120325 - 51120372
Alignment:
Q  44 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 91  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  51120325 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 7561391 - 7561332
Alignment:
Q  39 tgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaaccatgg 98  Q
    |||||||||||||||||||||||| |||||| ||  | ||||||| ||||||||| ||||    
T  7561391 tgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg 7561332  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  49 tatttacctgatgaatgttgggaaagtatcttcaaatt 86  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 554146 - 554097
Alignment:
Q  42 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 91  Q
    ||||||||| || ||||||||||||||||||  | |||||||||||||||    
T  554146 tgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 566795 - 566754
Alignment:
Q  46 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 87  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  566795 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 642393 - 642341
Alignment:
Q  40 gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaa 92  Q
    ||||| ||||||||||||||||||||||||||  | |||||||| || |||||    
T  642393 gctgagttttatttacctgatgaatgttgggagtgcatcttcaattttctcaa 642341  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 1488821 - 1488868
Alignment:
Q  46 ttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac 93  Q
    ||||||||||||||||| || |||||| || || ||||||||||||||    
T  1488821 ttttatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaac 1488868  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 45244521 - 45244570
Alignment:
Q  44 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac 93  Q
    |||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctcaac 45244570  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  49 tatttacctgatgaatgttgggaaagtatcttcaaattcct 89  Q
    |||||||||||||| ||||||||| || |||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 29022176 - 29022133
Alignment:
Q  47 tttatttacctgatgaatgttgggaaagtatcttcaaattcctc 90  Q
    ||||||||||||| || ||||||||| | |||||||||||||||    
T  29022176 tttatttacctgacgagtgttgggaatgcatcttcaaattcctc 29022133  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 41900191 - 41900234
Alignment:
Q  49 tatttacctgatgaatgttgggaaagtatcttcaaattcctcaa 92  Q
    |||||||| ||||| ||||||||| || ||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctcaa 41900234  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 17642611 - 17642658
Alignment:
Q  46 ttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac 93  Q
    ||||||||||||||||| ||||||||   | |||||||||||||||||    
T  17642611 ttttatttacctgatgagtgttgggagtctgtcttcaaattcctcaac 17642658  T

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