View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-10 (Length: 160)
Name: Solexa-NF5872-10
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 27772958 - 27772800
Alignment:
| Q |
2 |
ccacagatattaggtttcactaatttaactgttgaatattactatgttatctcagaaattatgcaaatcaaattttatgtatacaaagtccaaattcgaa |
101 |
Q |
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| T |
27772958 |
ccacagatattaggtttcactaatttaactgttgaatattactatgttatctcagaaattaagcacatcaaattttatgtatacaaagtccaaatttgaa |
27772859 |
T |
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| Q |
102 |
acaattgaattgaaggataaaggctctgtttggataaacatcttaattaagcgcctatg |
160 |
Q |
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| T |
27772858 |
acaattgaattgaagggtaaaggctctgtttggataaacatcttaattaagcgcctatg |
27772800 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 49365990 - 49365950
Alignment:
| Q |
115 |
aggataaaggctctgtttggataaacatcttaattaagcgc |
155 |
Q |
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| T |
49365990 |
aggatcaaggctctgtttggataaacaacttagttaagcgc |
49365950 |
T |
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Target: chr6 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 155
Target Start/End: Original strand, 3528685 - 3528712
Alignment:
| Q |
128 |
tgtttggataaacatcttaattaagcgc |
155 |
Q |
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| T |
3528685 |
tgtttggataaacatcttaattaagcgc |
3528712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 155
Target Start/End: Complemental strand, 26282178 - 26282151
Alignment:
| Q |
128 |
tgtttggataaacatcttaattaagcgc |
155 |
Q |
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| T |
26282178 |
tgtttggataaacatcttaattaagcgc |
26282151 |
T |
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