View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-12 (Length: 143)
Name: Solexa-NF5872-12
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-12 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 36001875 - 36002017
Alignment:
| Q |
1 |
gagatgaacaatcattgagactgagtgatttaagagattttgaatgaatgttggttttcaggcttttaatctttttgcagccgtctaaacgtagataact |
100 |
Q |
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| T |
36001875 |
gagatgaacaattattgagactgagtgattcaagagattttgaatgaatgttggttttcaggcttttaatctttttgcagccgtctaaacgtagataact |
36001974 |
T |
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| Q |
101 |
aagcttgggggcagtcaaaatggattcatggagtttacagaga |
143 |
Q |
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| T |
36001975 |
aagcttgggggcagtcaaaatggattcatggagtttacagaga |
36002017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 23446685 - 23446733
Alignment:
| Q |
32 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgcag |
80 |
Q |
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| T |
23446685 |
aagagattttgaatgaatgttggttttaaggctttcaatctttttgcag |
23446733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23453461 - 23453508
Alignment:
| Q |
32 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
79 |
Q |
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| T |
23453461 |
aagagattttgaatgaatgttggttttaaggctttcaatctttttgca |
23453508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23477985 - 23478032
Alignment:
| Q |
32 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
79 |
Q |
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| T |
23477985 |
aagagattttgaatgaatgttggttttaaggctttcaatctttttgca |
23478032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23498434 - 23498481
Alignment:
| Q |
32 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
79 |
Q |
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| T |
23498434 |
aagagattttgaatgaatgttggttttaaggctttcaatctttttgca |
23498481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23351382 - 23351429
Alignment:
| Q |
32 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
79 |
Q |
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| T |
23351382 |
aagagattttgaatgaatgttggttttaaggctttcaatctttatgca |
23351429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 23385721 - 23385767
Alignment:
| Q |
33 |
agagattttgaatgaatgttggttttcaggcttttaatctttttgca |
79 |
Q |
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| T |
23385721 |
agagattttgaatgaatgttggatttaaggctttcaatctttatgca |
23385767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 12897635 - 12897501
Alignment:
| Q |
1 |
gagatgaacaatcattgagactgagtgatttaagagattttgaatgaatgttggttttcaggcttttaatctttttgcagccgtctaaacgtagataact |
100 |
Q |
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|||||||||||||| |||| ||||| | |||||||||||||||||||| ||||||||||||| |||||||||||| || | |||| ||| | || |
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| T |
12897635 |
gagatgaacaatcagtgagctcgagtgttcggagagattttgaatgaatgttagttttcaggctttcaatctttttgcaaccttttaaatatagttctct |
12897536 |
T |
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| Q |
101 |
aagcttgggggcagtcaaaatggattcatggagtt |
135 |
Q |
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| T |
12897535 |
aagcttcggggcagtgaaaatggatggatggagtt |
12897501 |
T |
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