View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-13 (Length: 140)
Name: Solexa-NF5872-13
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 289172 - 289311
Alignment:
| Q |
1 |
agagagataaagtgtaatgacaatgatggcatggctttgcttataaaatatttcattctgattagttgggaccggtagcgggtttaaatccattaaaatg |
100 |
Q |
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| T |
289172 |
agagagataaagtgtaatgacaataatggcatggctttgcttataaaatatttcattctgattagttgggagcagtgacgggtttaaatccattaaaatg |
289271 |
T |
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| Q |
101 |
caacgacatgatattgtaaattattatttctattaatttt |
140 |
Q |
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| T |
289272 |
caacgacatggtattgtaaattattatttctattaatttt |
289311 |
T |
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