View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5872-16 (Length: 139)
Name: Solexa-NF5872-16
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 115; Significance: 8e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 14230196 - 14230058
Alignment:
| Q |
1 |
aaacatcatttggtaaaataaggccatggtgcagatcaattagaacacgaattctggaaaacctatgaaacaccggcacagatacacgacatgggtaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14230196 |
aaacatcatttggtaaaataaggccatggtgcagatcaattagaacacgaattctggaaaacctatgaaacactggcacagacacacgacatgggtaccg |
14230097 |
T |
|
| Q |
101 |
atcatcatttgagcaaatgacataatcaaatatacatat |
139 |
Q |
| |
|
|| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
14230096 |
ataatcatttgagaaaatgacataattcaatatacatat |
14230058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University