View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-17 (Length: 139)
Name: Solexa-NF5872-17
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-17 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 3650134 - 3650041
Alignment:
| Q |
46 |
accaaaaaactctgtataagctattctaccaaaataagcttatgaaaataagctgccagcttatgagtatatcatagactaatttcacaacctg |
139 |
Q |
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| T |
3650134 |
accaaaaaactctgcataagctattctaccaaaataagcttatgaaaataagctgccagcttatgagtaaatcatagactaatttcacaacctg |
3650041 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 3636899 - 3636854
Alignment:
| Q |
76 |
aaaataagcttatgaaaataagctgccagcttatgagtatatcata |
121 |
Q |
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| T |
3636899 |
aaaataagcttaagaaactaagctaccagcttataagtatatcata |
3636854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 9186 - 9231
Alignment:
| Q |
76 |
aaaataagcttatgaaaataagctgccagcttatgagtatatcata |
121 |
Q |
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| T |
9186 |
aaaataagcttaagaaactaagctaccagcttataagtatatcata |
9231 |
T |
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