View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-2 (Length: 257)
Name: Solexa-NF5872-2
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-2 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 13879056 - 13879297
Alignment:
| Q |
9 |
gatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgat |
108 |
Q |
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| T |
13879056 |
gatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgat |
13879155 |
T |
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| Q |
109 |
agcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaac |
208 |
Q |
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| T |
13879156 |
agcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaac |
13879255 |
T |
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| Q |
209 |
taattcatcatttaaaatagtaactaaaaaactacttctctg |
250 |
Q |
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| T |
13879256 |
taattcatcatttaaaatagtaactaaaatactacttctctg |
13879297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
81 |
taatcatatatttataatattgattgatagcaattggta |
119 |
Q |
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| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
161 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
242 |
Q |
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| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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