View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5872-20 (Length: 133)

Name: Solexa-NF5872-20
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5872-20
Solexa-NF5872-20
[»] chr5 (9 HSPs)
chr5 (1-130)||(27772652-27772781)
chr5 (35-89)||(41277398-41277452)
chr5 (34-72)||(19138766-19138804)
chr5 (45-97)||(2933709-2933761)
chr5 (34-70)||(9634759-9634795)
chr5 (35-94)||(4855661-4855720)
chr5 (35-94)||(14295469-14295528)
chr5 (32-71)||(37588405-37588444)
chr5 (29-72)||(41957493-41957536)
[»] chr3 (14 HSPs)
chr3 (35-94)||(36646430-36646489)
chr3 (35-88)||(28306127-28306180)
chr3 (36-100)||(31337450-31337514)
chr3 (35-97)||(1816543-1816605)
chr3 (35-89)||(2201096-2201150)
chr3 (35-72)||(41057023-41057060)
chr3 (35-72)||(52597673-52597710)
chr3 (37-97)||(20220400-20220460)
chr3 (35-75)||(22343590-22343630)
chr3 (35-75)||(23249540-23249580)
chr3 (35-75)||(43875630-43875670)
chr3 (29-72)||(1217842-1217885)
chr3 (32-71)||(14548766-14548805)
chr3 (41-72)||(51197790-51197821)
[»] chr1 (15 HSPs)
chr1 (35-74)||(44940324-44940363)
chr1 (35-75)||(8130418-8130458)
chr1 (35-75)||(12564922-12564962)
chr1 (39-82)||(22810680-22810723)
chr1 (35-72)||(25005845-25005882)
chr1 (35-72)||(25006082-25006119)
chr1 (18-70)||(15361700-15361752)
chr1 (35-75)||(37842403-37842443)
chr1 (35-94)||(5150900-5150959)
chr1 (31-94)||(5592729-5592792)
chr1 (36-75)||(5756735-5756774)
chr1 (34-89)||(10581124-10581179)
chr1 (35-94)||(27738228-27738287)
chr1 (40-75)||(46980182-46980217)
chr1 (35-94)||(49888730-49888789)
[»] chr8 (10 HSPs)
chr8 (18-88)||(29973050-29973120)
chr8 (34-89)||(6864506-6864561)
chr8 (35-72)||(9834837-9834874)
chr8 (17-94)||(34770855-34770932)
chr8 (39-92)||(38260497-38260550)
chr8 (32-72)||(10727182-10727221)
chr8 (34-74)||(11795075-11795115)
chr8 (32-72)||(13652200-13652240)
chr8 (32-72)||(13710843-13710883)
chr8 (34-94)||(35869800-35869860)
[»] chr7 (10 HSPs)
chr7 (41-88)||(46082002-46082050)
chr7 (36-94)||(5006558-5006616)
chr7 (35-89)||(28340444-28340498)
chr7 (35-97)||(31338468-31338530)
chr7 (37-94)||(17989073-17989130)
chr7 (35-100)||(30456498-30456563)
chr7 (32-75)||(25507331-25507374)
chr7 (35-94)||(27548226-27548285)
chr7 (35-82)||(44151528-44151575)
chr7 (32-63)||(44821953-44821984)
[»] chr2 (19 HSPs)
chr2 (32-72)||(15377750-15377790)
chr2 (39-75)||(37276728-37276764)
chr2 (35-94)||(3673770-3673829)
chr2 (35-82)||(5867239-5867286)
chr2 (35-94)||(11513861-11513920)
chr2 (35-94)||(14666511-14666570)
chr2 (35-89)||(5043608-5043662)
chr2 (35-97)||(29300605-29300667)
chr2 (35-89)||(33941877-33941931)
chr2 (35-89)||(37053562-37053616)
chr2 (35-72)||(1625885-1625922)
chr2 (35-63)||(9477946-9477974)
chr2 (35-95)||(18066090-18066150)
chr2 (38-94)||(33942113-33942169)
chr2 (38-70)||(42621618-42621650)
chr2 (35-63)||(44590028-44590056)
chr2 (35-62)||(10563606-10563633)
chr2 (42-97)||(33944565-33944620)
chr2 (35-70)||(39983329-39983364)
[»] chr6 (5 HSPs)
chr6 (39-94)||(33787797-33787852)
chr6 (35-72)||(25100028-25100065)
chr6 (35-94)||(1402959-1403018)
chr6 (33-72)||(1432123-1432162)
chr6 (38-97)||(3204593-3204652)
[»] chr4 (19 HSPs)
chr4 (35-94)||(3175914-3175973)
chr4 (40-75)||(22471313-22471348)
chr4 (36-75)||(30207620-30207659)
chr4 (36-75)||(55870390-55870429)
chr4 (40-94)||(24193548-24193602)
chr4 (40-94)||(24929456-24929510)
chr4 (29-75)||(42866050-42866096)
chr4 (35-72)||(2996558-2996595)
chr4 (35-72)||(10192269-10192306)
chr4 (35-72)||(29263355-29263392)
chr4 (34-94)||(437479-437539)
chr4 (35-75)||(23819071-23819111)
chr4 (34-94)||(24444001-24444061)
chr4 (39-75)||(36722721-36722757)
chr4 (35-75)||(46415840-46415880)
chr4 (36-72)||(46797003-46797039)
chr4 (35-94)||(47119013-47119072)
chr4 (36-75)||(49085971-49086010)
chr4 (35-94)||(49219102-49219161)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 2e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 27772652 - 27772781
Alignment:
Q  1 caaacaacttgcacaggtccatcaactgtcaagaatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatttta 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27772652 caaacaacttgcacatgtccatcaactgtcaagaatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatttta 27772751  T
Q  101 agaagagcctttaagatgtttatgaaaaca 130  Q
    ||||||||||||||||||||||||||||||    
T  27772752 agaagagcctttaagatgtttatgaaaaca 27772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 41277398 - 41277452
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||||||||||||||||| |||||||| |||||||||||  ||||| ||||||    
T  41277398 atagcttatgaaaacaacttttaacttatatgaaaacagtttgactttattttat 41277452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 19138766 - 19138804
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  19138766 aatagcttatgaaaacaacttatagcttatctgaaaaca 19138804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 2933709 - 2933761
Alignment:
Q  45 aaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    ||||||||||||||||||| |||||||||||  ||||  |||||| |||||||    
T  2933709 aaaacaacttataacttatatgaaaacagtttaacttcattttatcttttatt 2933761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 9634795 - 9634759
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaa 70  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  9634795 aatagcttatgaaaacaacttataacatatatgaaaa 9634759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 4855720 - 4855661
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||| |||||||||||||||||||||||| ||| |||| ||  ||||| |||||| ||||    
T  4855720 atagtttatgaaaacaacttataacttatatgataacaatttaactttattttatttttt 4855661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 14295528 - 14295469
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||| ||||||| |||||| ||||| |||||||||||  ||||| |||||| ||||    
T  14295528 atagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatctttt 14295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 37588405 - 37588444
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaac 71  Q
    |||||| ||||||||||||||||||| ||||| |||||||    
T  37588405 agaataacttatgaaaacaacttatagcttatatgaaaac 37588444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 41957493 - 41957536
Alignment:
Q  29 tcaagaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||| |||||||||||||||| |||||||||||  ||||||||    
T  41957493 tcaaggatagcttatgaaaacagcttataacttacatgaaaaca 41957536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 36646430 - 36646489
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||| ||||    
T  36646430 atagcttatgaaaacaagttataacttatatgaaaacaattatactttattttatctttt 36646489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 28306180 - 28306127
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgtttta 88  Q
    |||||||||||||||||||| |||||||| |||||||||||  ||||| |||||    
T  28306180 atagcttatgaaaacaacttgtaacttatatgaaaacagtttgactttatttta 28306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 31337450 - 31337514
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatttta 100  Q
    ||||||||||| |||||||||||||||| | |||||||||  ||||| |||||| |||| |||||    
T  31337450 tagcttatgaatacaacttataacttatataaaaacagtttgactttattttatcttttgtttta 31337514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 1816605 - 1816543
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    ||||||||||||||||||||||| |||||   |||||||||  ||||| |||||| |||||||    
T  1816605 atagcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatcttttatt 1816543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 2201150 - 2201096
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||| ||||||||| |||||| ||||| |||||||||||  ||||||||||||    
T  2201150 atagctaatgaaaacagcttatagcttatatgaaaacagtttgactttgttttat 2201096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 41057060 - 41057023
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  41057060 atagcttatgaaaacaacttatagcttatatgaaaaca 41057023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 52597710 - 52597673
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  52597710 atagcttatgaaaacatcttataacttatatgaaaaca 52597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 20220460 - 20220400
Alignment:
Q  37 agcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    ||||||| |||||| |||||| ||| |||  |||||||| ||||||||||||| |||||||    
T  20220460 agcttataaaaacagcttatagcttgtttagaaacagttttactttgttttatcttttatt 20220400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 22343630 - 22343590
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||| ||||| |||||||||||| |||||||||||    
T  22343630 atagcttatggaaacagcttataacttatatgaaaacagtt 22343590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 23249580 - 23249540
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  23249580 atagcttatgaaaacaacttatatcttatataaaaacagtt 23249540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 43875670 - 43875630
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  43875670 atagcttatgaaaacaacttatagcttatatgagaacagtt 43875630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 1217842 - 1217885
Alignment:
Q  29 tcaagaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||| |||||||||||||||| |||||||||||  ||||||||    
T  1217842 tcaaggatagcttatgaaaacagcttataacttacatgaaaaca 1217885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 14548766 - 14548805
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaac 71  Q
    |||||| ||||||||||||||||||| ||||| |||||||    
T  14548766 agaataacttatgaaaacaacttatagcttatatgaaaac 14548805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 51197790 - 51197821
Alignment:
Q  41 tatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||| ||||||||    
T  51197790 tatgaaaacaacttataacttatatgaaaaca 51197821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 44940363 - 44940324
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagt 74  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  44940363 atagattatgaaaacaacttataacttatttgaaaacagt 44940324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 8130458 - 8130418
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  8130458 atagcttatgaaaacaacttatagcttatgtgaaaacagtt 8130418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 12564922 - 12564962
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  12564922 atagcttatgaaaacaacttatagcttatatgaaaacagtt 12564962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 22810680 - 22810723
Alignment:
Q  39 cttatgaaaacaacttataacttatttgaaaacagttatacttt 82  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||    
T  22810680 cttatgaaaacaacttataactaatttgaatacagttttacttt 22810723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 25005845 - 25005882
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  25005845 atagcttatgaaaacaacttatagcttatatgaaaaca 25005882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 25006082 - 25006119
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  25006082 atagcttatgaaaacaacttatagcttatatgaaaaca 25006119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 15361752 - 15361700
Alignment:
Q  18 tccatcaactgtcaagaatagcttatgaaaacaacttataacttatttgaaaa 70  Q
    ||||| |||| ||||||||| |||||||||||| |||||| ||||| ||||||    
T  15361752 tccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaa 15361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 37842403 - 37842443
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||| |||||| ||| ||||||    
T  37842403 atagcttatgaaaacaacttatagcttattcgaacacagtt 37842443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 5150959 - 5150900
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||| ||| ||||||  |||||| ||||  ||||| |||||||||||    
T  5150959 atagcttatgaaaacaaattacaacttaaatgaaaatagtttgactttattttatatttt 5150900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 5592729 - 5592792
Alignment:
Q  31 aagaatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||| |||||||||||||||||||||| ||||| ||| |||| ||  ||||| |||||| ||||    
T  5592729 aagactagcttatgaaaacaacttatagcttatatgacaacaattcgactttattttatctttt 5592792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 5756735 - 5756774
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||| ||||||||||||||| |||| |||||||||||    
T  5756735 tagcttacgaaaacaacttataatttatatgaaaacagtt 5756774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 10581124 - 10581179
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||||||||||||||||||||| ||||  |||||| ||||  ||||| ||||||    
T  10581124 aatagcttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattttat 10581179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 27738228 - 27738287
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||  ||||| |||||| ||||    
T  27738228 atagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatctttt 27738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 46980182 - 46980217
Alignment:
Q  40 ttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||| ||||||||||| |||||||||||    
T  46980182 ttatgaaaacaatttataacttatatgaaaacagtt 46980217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 49888789 - 49888730
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||||| ||| |||||  ||||||| ||| ||||| |||||| ||||    
T  49888789 atagcttatgaaaacaactaatagcttatacgaaaacaattaaactttattttatctttt 49888730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 29973120 - 29973050
Alignment:
Q  18 tccatcaactgtcaagaatagcttatgaaaacaacttataacttatttgaaaacagttatactttgtttta 88  Q
    ||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||| ||||  ||||| |||||    
T  29973120 tccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttatttta 29973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 6864506 - 6864561
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||||||||||||||||||||||||||  |||||| ||||  ||||| ||||||    
T  6864506 aatagcttatgaaaacaacttataacttacatgaaaatagtttgactttattttat 6864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 9834837 - 9834874
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  9834837 atagcttatgaaaacaacttatagcttatatgaaaaca 9834874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 34770932 - 34770855
Alignment:
Q  17 gtccatcaactgtcaagaatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||| |||| || || ||||||||||||||||||||||| ||||  |||||||| ||  ||||| |||||| ||||    
T  34770932 gtccatgaactctctaggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatctttt 34770855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 38260550 - 38260497
Alignment:
Q  39 cttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatt 92  Q
    |||| |||||||||||||||||||  |||||||||||  ||||| |||||||||    
T  38260550 cttaagaaaacaacttataacttaaatgaaaacagtttaactttcttttatatt 38260497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 10727221 - 10727182
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  10727221 agaatagcttat-aaaacaacttataacttatgtgaaaaca 10727182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 11795115 - 11795075
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagt 74  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  11795115 aatagcttatgaaatcagcttataacttatatgaaaacagt 11795075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 13652240 - 13652200
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||| ||||||| ||||||||||| ||||||||    
T  13652240 agaatagcttataaaaacaatttataacttatatgaaaaca 13652200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 13710883 - 13710843
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||| ||||||| ||||||||||| ||||||||    
T  13710883 agaatagcttataaaaacaatttataacttatatgaaaaca 13710843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 35869860 - 35869800
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||||||||||| ||||| ||||||  |||  | ||| |||||||||||    
T  35869860 aatagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatatttt 35869800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 46082050 - 46082002
Alignment:
Q  41 tatgaaaacaacttataacttatttgaaaacagttat-actttgtttta 88  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  46082050 tatgaaaacaacttataacttatatgaaaacagttttgactttgtttta 46082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 5006558 - 5006616
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||| ||||| ||||| |||||||||||  ||||| |||||| ||||    
T  5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatctttt 5006616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 28340444 - 28340498
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    ||||||| ||||||||||||||||||||  |||||||||||  ||||| ||||||    
T  28340444 atagcttctgaaaacaacttataacttacatgaaaacagtttgactttattttat 28340498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 31338530 - 31338468
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    |||| ||||| |||||||||||||||||| | |||||||||  ||||| |||||| |||||||    
T  31338530 atagtttatggaaacaacttataacttatataaaaacagtttgactttattttatcttttatt 31338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 17989073 - 17989130
Alignment:
Q  37 agcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||| |||||  |||| |||||||||||  ||||| |||||||||||    
T  17989073 agcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatatttt 17989130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 30456498 - 30456563
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatttta 100  Q
    |||| |||||||||| ||||||||||||| |||||||| ||  ||||| |||||| |||| |||||    
T  30456498 atagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgtttta 30456563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 25507374 - 25507331
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||| ||||||||||||||||||| ||||| |||||| ||||    
T  25507374 agaataacttatgaaaacaacttatagcttatatgaaaatagtt 25507331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 27548285 - 27548226
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||| |||||| ||||  |||||||| ||| ||||| |||||| ||||    
T  27548285 atagcttatgaaaacagcttatagcttaaatgaaaacaattagactttattttatctttt 27548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 44151528 - 44151575
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatacttt 82  Q
    |||| |||||||||||||||||| ||||| || |||||||| ||||||    
T  44151528 atagtttatgaaaacaacttatagcttatatggaaacagttttacttt 44151575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 44821984 - 44821953
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttat 63  Q
    ||||||||||||||||||| ||||||||||||    
T  44821984 agaatagcttatgaaaacagcttataacttat 44821953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.0000000007; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 15377790 - 15377750
Alignment:
Q  32 agaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  15377790 agaatagcttatgaaaacagcttataacttatatgaaaaca 15377750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 37276764 - 37276728
Alignment:
Q  39 cttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37276764 cttatgaaaacaacttataacttatatgaaaacagtt 37276728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 3673829 - 3673770
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||| ||||||| |||||||||||||| |||||||| ||  ||||| |||||||||||    
T  3673829 atagctaatgaaaaaaacttataacttatatgaaaacaatttaactttattttatatttt 3673770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 5867239 - 5867286
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatacttt 82  Q
    ||||||||||||||||||||| ||||||| |||||||| || ||||||    
T  5867239 atagcttatgaaaacaacttaaaacttatgtgaaaacacttttacttt 5867286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 11513920 - 11513861
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||||||||| ||||| |||||||| ||  ||||| |||||| ||||    
T  11513920 atagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatctttt 11513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 14666570 - 14666511
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||||| |||||| ||||    
T  14666570 atagcttgtgaaaacaacttataacttatatgaaatcagtttgactttattttatctttt 14666511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 5043608 - 5043662
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||||||||||||||||| || ||||| |||||||||||  ||||| ||||||    
T  5043608 atagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttat 5043662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 29300667 - 29300605
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    ||||||||||||||||||||||||||||  |||||||| ||   |||| |||||| |||||||    
T  29300667 atagcttatgaaaacaacttataacttacatgaaaacaattcacctttattttatcttttatt 29300605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 33941931 - 33941877
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    ||||||||||||||||| |||||||||||   |||||| || |||||||||||||    
T  33941931 atagcttatgaaaacaagttataacttatacaaaaacaattttactttgttttat 33941877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 37053616 - 37053562
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttat 89  Q
    |||||| ||||||| |||||||||||||| |||||||||||  ||||| ||||||    
T  37053616 atagctaatgaaaaaaacttataacttatatgaaaacagtttgactttattttat 37053562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 1625922 - 1625885
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||||||||||||||||||||  |||||||    
T  1625922 atagcttatgaaaacaacttataacttatacgaaaaca 1625885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 9477974 - 9477946
Alignment:
Q  35 atagcttatgaaaacaacttataacttat 63  Q
    |||||||||||||||||||||||||||||    
T  9477974 atagcttatgaaaacaacttataacttat 9477946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 18066150 - 18066090
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttta 95  Q
    |||||||||||||||| |||||| ||||| |||||||| ||  ||||| ||| ||||||||    
T  18066150 atagcttatgaaaacagcttatagcttatatgaaaacaatttaactttatttcatatttta 18066090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 33942169 - 33942113
Alignment:
Q  38 gcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||||||| ||||  |||||||||||  ||||| |||||| ||||    
T  33942169 gcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatctttt 33942113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 42621650 - 42621618
Alignment:
Q  38 gcttatgaaaacaacttataacttatttgaaaa 70  Q
    |||||||||||||||||||||||||| ||||||    
T  42621650 gcttatgaaaacaacttataacttatatgaaaa 42621618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 44590056 - 44590028
Alignment:
Q  35 atagcttatgaaaacaacttataacttat 63  Q
    |||||||||||||||||||||||||||||    
T  44590056 atagcttatgaaaacaacttataacttat 44590028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 62
Target Start/End: Original strand, 10563606 - 10563633
Alignment:
Q  35 atagcttatgaaaacaacttataactta 62  Q
    ||||||||||||||||||||||||||||    
T  10563606 atagcttatgaaaacaacttataactta 10563633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 33944620 - 33944565
Alignment:
Q  42 atgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    |||||||||| ||||| ||||| |||||||| ||  ||||| ||||||||||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgactttattttatattttatt 33944565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 39983364 - 39983329
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaa 70  Q
    ||||||||||||||||||||||| ||||| ||||||    
T  39983364 atagcttatgaaaacaacttatagcttatatgaaaa 39983329  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 33787797 - 33787852
Alignment:
Q  39 cttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||| |||||||||||| ||||| || ||  |||||||||||||||||    
T  33787797 cttatgaaaacagcttataacttatatgaaatcaatttgactttgttttatatttt 33787852  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 25100065 - 25100028
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  25100065 atagcttatgaaaacaacttataacttctatgaaaaca 25100028  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 1403018 - 1402959
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||  ||||| |||||| ||||    
T  1403018 atagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatctttt 1402959  T

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Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 1432162 - 1432123
Alignment:
Q  33 gaatagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||||||| | | ||||||||    
T  1432162 gaatagcttatgaaaacaacttataacatgtatgaaaaca 1432123  T

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Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 3204593 - 3204652
Alignment:
Q  38 gcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatattttatt 97  Q
    |||||||||||||| || || ||||| |||||||||||  ||||| |||||| |||||||    
T  3204593 gcttatgaaaacaatttctagcttatatgaaaacagttcgactttattttatcttttatt 3204652  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 3175973 - 3175914
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||| ||||||||||| ||||||||| ||  ||||| |||||| ||||    
T  3175973 atagcttatgaaaacagcttataacttacttgaaaacaatttgactttattttatctttt 3175914  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 22471348 - 22471313
Alignment:
Q  40 ttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||||||||||||||| |||||||||||    
T  22471348 ttatgaaaacaacttataacttatatgaaaacagtt 22471313  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 30207620 - 30207659
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  30207620 tagcttatgaaaacaacttatagcttatatgaaaacagtt 30207659  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 55870390 - 55870429
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  55870390 tagcttatgaaaacaacttatagcttatgtgaaaacagtt 55870429  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 24193602 - 24193548
Alignment:
Q  40 ttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||| |||||||||||||||||| |||||| ||||  ||| |||||||||||||    
T  24193602 ttatggaaacaacttataacttatatgaaaatagtttaactctgttttatatttt 24193548  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 24929510 - 24929456
Alignment:
Q  40 ttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||||| ||| | |||||||||||| ||||| |||||| ||||    
T  24929510 ttatgaaaacaacttatagcttttatgaaaacagttagactttattttatctttt 24929456  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 42866096 - 42866050
Alignment:
Q  29 tcaagaatagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||||    
T  42866096 tcaaggatagcttatgaaaacaacttatagcttatataaaaacagtt 42866050  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 2996595 - 2996558
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  2996595 atagcttatgaaaacaacttataacttatataaaaaca 2996558  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 10192306 - 10192269
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  10192306 atagcttttgaaaacaacttataacttatatgaaaaca 10192269  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 29263392 - 29263355
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  29263392 atagcttatgaaaacaacttatcgcttatttgaaaaca 29263355  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 437479 - 437539
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||||||||| ||||||| |||| ||| ||  ||||| |||||| ||||    
T  437479 aatagcttatgaaaacaacttaaaacttatatgaacacaatttaactttattttatctttt 437539  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 23819111 - 23819071
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  23819111 atagcttatgaaaacatgttataacttatatgaaaacagtt 23819071  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 24444061 - 24444001
Alignment:
Q  34 aatagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||||||||||||||||||||||| ||||| ||||||  |||  | ||| |||||||||||    
T  24444061 aatagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatatttt 24444001  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 36722721 - 36722757
Alignment:
Q  39 cttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  36722721 cttatcaaaacaacttataacttatatgaaaacagtt 36722757  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 46415840 - 46415880
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||||| |||||||||||| | |||||||||||    
T  46415840 atagcttatgaaaagaacttataacttgtatgaaaacagtt 46415880  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 46797039 - 46797003
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaaca 72  Q
    |||||||||||||||||||||||||||| || |||||    
T  46797039 tagcttatgaaaacaacttataacttatatggaaaca 46797003  T

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Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 47119013 - 47119072
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    ||||| |||||| |||||||||| ||||| |||||||| ||  |||||||||||| ||||    
T  47119013 atagcatatgaatacaacttatagcttatatgaaaacaatttaactttgttttatctttt 47119072  T

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Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 49086010 - 49085971
Alignment:
Q  36 tagcttatgaaaacaacttataacttatttgaaaacagtt 75  Q
    |||||||||||||||||||||||||| | |||||| ||||    
T  49086010 tagcttatgaaaacaacttataacttgtatgaaaatagtt 49085971  T

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Target: chr4; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 49219161 - 49219102
Alignment:
Q  35 atagcttatgaaaacaacttataacttatttgaaaacagttatactttgttttatatttt 94  Q
    |||| |||||||||||||||||| ||||| |||||| | ||  ||||| |||||||||||    
T  49219161 atagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatatttt 49219102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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