View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5872-23 (Length: 126)
Name: Solexa-NF5872-23
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-23 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 289626 - 289508
Alignment:
| Q |
8 |
tatgtttatgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
289626 |
tatgtctatgactagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaac |
289527 |
T |
|
| Q |
108 |
ttgatggttggtttcttaa |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
289526 |
ttgatggttggtttcttaa |
289508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 24523929 - 24523823
Alignment:
| Q |
15 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
24523929 |
atgattagattcacttcctaccttaaaatgattttttggttgaggttttcttacttaaaaatattggttggttgtgaattgtcgttttctaacatgatgg |
24523830 |
T |
|
| Q |
115 |
ttggttt |
121 |
Q |
| |
|
||||||| |
|
|
| T |
24523829 |
ttggttt |
24523823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 24531354 - 24531248
Alignment:
| Q |
15 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||| |||||| |
|
|
| T |
24531354 |
atgattagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatattggttggctgtgaattgtcgttttctaacatgatgg |
24531255 |
T |
|
| Q |
115 |
ttggttt |
121 |
Q |
| |
|
||||||| |
|
|
| T |
24531254 |
ttggttt |
24531248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University