View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-25 (Length: 124)
Name: Solexa-NF5872-25
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-25 |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 36002473 - 36002356
Alignment:
| Q |
7 |
aagaaatgaaggatccattgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttg |
106 |
Q |
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| T |
36002473 |
aagaaatgaaggatccattgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttg |
36002374 |
T |
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| Q |
107 |
ccagcaagcttctgtgct |
124 |
Q |
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| T |
36002373 |
ccagcaagcttctgtgct |
36002356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 23439822 - 23439779
Alignment:
| Q |
41 |
ggtcttgagtggttgtctgataaattgaggtaccttaaatggga |
84 |
Q |
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| T |
23439822 |
ggtctcgagtggctttctgataaattgaggtaccttcaatggga |
23439779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 23468451 - 23468416
Alignment:
| Q |
41 |
ggtcttgagtggttgtctgataaattgaggtacctt |
76 |
Q |
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| T |
23468451 |
ggtcttgagtggatttctgataaattgaggtacctt |
23468416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 23472357 - 23472314
Alignment:
| Q |
41 |
ggtcttgagtggttgtctgataaattgaggtaccttaaatggga |
84 |
Q |
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| T |
23472357 |
ggtctcgagtggctttctgataaattgaggtaccttcaatggga |
23472314 |
T |
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Target: chr2 (Bit Score: 56; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 16337574 - 16337673
Alignment:
| Q |
25 |
tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgct |
124 |
Q |
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| T |
16337574 |
tgtgcatctccaagaaggtcttgagtggttgtctgataaattgaggtaccttcattgggaatcatttccacttgaatctttgccatcaaccttttgtgct |
16337673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 16121594 - 16121510
Alignment:
| Q |
25 |
tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgcca |
109 |
Q |
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| T |
16121594 |
tgtgcatctccaagaaggtcttgagtggttgtctgataaattgagctaccttcattgggaatcatttccacttgagtctttgcca |
16121510 |
T |
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Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 12897074 - 12897172
Alignment:
| Q |
25 |
tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgc |
123 |
Q |
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| T |
12897074 |
tgtgcacctccttgaaggtcttgaatggttgtctgataaattgaggcacctttattgggaagcattcccacttgagtctttgccatcaaccttttgtgc |
12897172 |
T |
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