View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-3 (Length: 60)
Name: Solexa-NF5872-3
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2777852 - 2777904
Alignment:
| Q |
8 |
gaattttatattgggcttaagccatgatgagaacaattgggcaggtttgtgat |
60 |
Q |
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| T |
2777852 |
gaattatatattgggcttaagcaatgatgagaacaattgggcaggtttgtgat |
2777904 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 55320557 - 55320505
Alignment:
| Q |
8 |
gaattttatattgggcttaagccatgatgagaacaattgggcaggtttgtgat |
60 |
Q |
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| T |
55320557 |
gaattatatattgggcttaagcaatgatgagaacaattgggcaggtttgtgat |
55320505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 31951658 - 31951609
Alignment:
| Q |
7 |
agaattttatattgggcttaagccatgatgagaacaattgggcaggtttg |
56 |
Q |
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| T |
31951658 |
agaattatatattgggcttaagcaatgatgtgaacaattgggcaggtttg |
31951609 |
T |
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