View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-30 (Length: 115)
Name: Solexa-NF5872-30
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-30 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 15302388 - 15302279
Alignment:
| Q |
7 |
acacaatcaagtaaaagggcccnnnnnnntgctacctcctttgaaggtgcctgactcttccaaa-gagaaacaaaaacactttcatcgaactcactcaca |
105 |
Q |
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| T |
15302388 |
acacaatcaagtaaaagggcccaagaaaatgctacctcctttgaatgtgcctgactcttccaaaagagaaacaaaaacactctcatcgaactcactcacc |
15302289 |
T |
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| Q |
106 |
ccacccccat |
115 |
Q |
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| T |
15302288 |
ccacccccat |
15302279 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 15294784 - 15294705
Alignment:
| Q |
7 |
acacaatcaagtaaaagggcccnnnnnnntgctacctcctttgaaggtgcctgactcttccaaagagaaacaaaaacact |
86 |
Q |
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|||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
15294784 |
acacaatcaattaaaagggcccaagaaaatgctacctcctttggaggtgccggactcttccaaagagaaacaaaaacact |
15294705 |
T |
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