View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-32 (Length: 109)
Name: Solexa-NF5872-32
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-32 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 5e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 30815081 - 30814983
Alignment:
| Q |
8 |
acctctactgcatctagcattccaggccctggataagttcatttctgagataggccgcttccccgtcgctggttcagaggaagatgcacataaattcat |
106 |
Q |
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| T |
30815081 |
acctctactgcatctagcattccaggccctggataagttcatttcagagataggccgcttccccgtcgctggttcagaggaagatgcacataaattcat |
30814983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 30834092 - 30833994
Alignment:
| Q |
8 |
acctctactgcatctagcattccaggccctggataagttcatttctgagataggccgcttccccgtcgctggttcagaggaagatgcacataaattcat |
106 |
Q |
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| T |
30834092 |
acctctactgcatctagcattccaggctctggataagttcatttctgagataggccgcttccccgtcgctggttcagaggaagatgcacataaattcat |
30833994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 23552508 - 23552606
Alignment:
| Q |
8 |
acctctactgcatctagcattccaggccctggataagttcatttctgagataggccgcttccccgtcgctggttcagaggaagatgcacataaattcat |
106 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23552508 |
acctctactgcatctagcattccaggccttggataagttcatttctgagattggccgcttccccgtcgctggttcagaggaagatgcacgtaaattcat |
23552606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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