View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-35 (Length: 51)
Name: Solexa-NF5872-35
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-35 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 45; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 32073362 - 32073318
Alignment:
| Q |
7 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgtg |
51 |
Q |
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| T |
32073362 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgtg |
32073318 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 32085720 - 32085676
Alignment:
| Q |
7 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgtg |
51 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32085720 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgtg |
32085676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 32102845 - 32102802
Alignment:
| Q |
7 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgt |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32102845 |
atgtaatttatgtatcattgaaaaattagaaaatcaaagtgtgt |
32102802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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