View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5872-4 (Length: 127)

Name: Solexa-NF5872-4

Description: NF5872

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] Solexa-NF5872-4

[»] chr5 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr5 (Bit Score: 99; Significance: 3e-49; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 99; E-Value: 3e-49

Query Start/End: Original strand, 6 - 108

Target Start/End: Original strand, 10393216 - 10393318

Alignment:

Q	6	aagggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaacgatgcc	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	10393216	aagggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaacgatgac	10393315	T

Q	106	aac	108	Q
		\|\|\|
T	10393316	aac	10393318	T

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Target: chr2 (Bit Score: 65; Significance: 5e-29; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 65; E-Value: 5e-29

Query Start/End: Original strand, 8 - 93

Target Start/End: Original strand, 30844090 - 30844177

Alignment:

Q	8	gggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtata--gcggagaaaacgtataaggaaga	93	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30844090	gggttacttgaaagaggaggaaaagaggaccaagctgaagaggttgtagaagaatagtgtataaggcagagaagacgtataaggaaga	30844177	T

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