View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-5 (Length: 215)
Name: Solexa-NF5872-5
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-5 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 5470565 - 5470741
Alignment:
| Q |
23 |
ttctttgtccgtcggtagagtttcctgaggtgccacaattgaggttaaaacggtcaattcggtcataggcatgaaggtgtaagagggaggtggaaaagta |
122 |
Q |
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| T |
5470565 |
ttctttgtccgtcggtagagtttcctgttgtgccacaattgaggttaaaacggtcaattgggtcgtaggcatgaaggtgtaagagggagatggaaaagta |
5470664 |
T |
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| Q |
123 |
taagaaggtgatgattatggttttgaagtttatcaatggtttcannnnnnncgtttgttcttgttgatgagtgtgtg |
199 |
Q |
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| T |
5470665 |
taagagggtgatgattatggttttaaagtttatcattgatttcatgttttttgtttgttcttgttgatgagtgtgtg |
5470741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 5476364 - 5476190
Alignment:
| Q |
23 |
ttctttgtccgtcggtagagtttcctgaggtgccacaattgaggttaaaacggtcaattcggtcataggcatgaaggtgtaagagggaggtggaaaagta |
122 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||| | |||| | |||||| ||||||| || |||||||||| ||||||| |||||||||| |
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| T |
5476364 |
ttctttgtccgtcggtagagtttcctgttgcgccacaactgacggtaaagtgttcaattgggtcataagcttgaaggtgtacgagggagatggaaaagta |
5476265 |
T |
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| Q |
123 |
taagaaggtgatgattatggttttgaagtttatcaatggtttcannnnnnncgtttgttcttgttgatgagtgtgtg |
199 |
Q |
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| T |
5476264 |
taagagggtgatgattatggttttgaagttaatcaatggtttcatgtttt--gtttgttcttgttgatgagtgtgtg |
5476190 |
T |
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