View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5872-8 (Length: 160)
Name: Solexa-NF5872-8
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5872-8 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 6e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 20575851 - 20576003
Alignment:
| Q |
1 |
tttagttttgattactactaaatccnnnnnnnaacagaatatatgatttatgatgtatgcaattttgtttctcacgtgttttatgaattttaaagtttaa |
100 |
Q |
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| T |
20575851 |
tttagttttgtttaatactaaatcctttttttaacagaatatatgatttatgatgtatgcaattttgtttctcacgtgttttgtgaattttaaagtttaa |
20575950 |
T |
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| Q |
101 |
tctttatattcttaaattagattcaaatttcttcctttccctcccctatgttt |
153 |
Q |
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| T |
20575951 |
tctttatatttttaaattagattcaaatttcttcctttccctccccaatgttt |
20576003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 20554979 - 20555096
Alignment:
| Q |
36 |
agaatatatgatttatgatgtatgcaattttgtttctcacgtgttttatgaattttaaagtttaatctttatattcttaaattagattcaaatttcttcc |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20554979 |
agaatatatgatttatgatgtatgcaattttgtttctcacgtgttttgtgaattttaaagtttaatctttatatttttaaattagattcaaatttcttcc |
20555078 |
T |
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| Q |
136 |
tttccctcccctatgttt |
153 |
Q |
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| T |
20555079 |
tttccctccccaatgttt |
20555096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 20569658 - 20569788
Alignment:
| Q |
1 |
tttagttttgattactactaaatccnnnnnnnaacagaatatatgatttatgatgtatgcaattttgtttctcacgtgttttatgaattttaaagtttaa |
100 |
Q |
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|||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20569658 |
tttagttttgtttaatactaaatcctttttttaacagaatatatgatttatgatgtatgcaattttgtttctcacgtgttttgtgaattttaaagtttaa |
20569757 |
T |
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| Q |
101 |
tctttatattcttaaattagattcaaatttc |
131 |
Q |
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| T |
20569758 |
tctttatatttttaaattagattcaaatttc |
20569788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 20548841 - 20548936
Alignment:
| Q |
36 |
agaatatatgatttatgatgtatgcaattttgtttctcacgtgttttatgaattttaaagtttaatctttatattcttaaattagattcaaatttc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20548841 |
agaatatatgatttatgatgtatgcaattttgtttctcacgtgttttgtgaattttaaagtttaatctttatatttttaaattagattcaaatttc |
20548936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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