View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-15 (Length: 143)
Name: Solexa-NF5873-15
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-15 |
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Alignment Details
Target: chr3 (Bit Score: 52; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10368659 - 10368608
Alignment:
| Q |
1 |
gagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
52 |
Q |
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| T |
10368659 |
gagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
10368608 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 10368546 - 10368517
Alignment:
| Q |
114 |
cacaagtttggtgacatttatataggctct |
143 |
Q |
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| T |
10368546 |
cacaagtttggtgacatttatataggctct |
10368517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 36116774 - 36116814
Alignment:
| Q |
3 |
gatgaaggagaagaagaagaatggagttcaaagattcagat |
43 |
Q |
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| T |
36116774 |
gatgaaggagaagaagaataatggagttcaaagattcagat |
36116814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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