View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-17 (Length: 143)
Name: Solexa-NF5873-17
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-17 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 10797500 - 10797635
Alignment:
| Q |
8 |
tttactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
107 |
Q |
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| T |
10797500 |
tttactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
10797599 |
T |
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| Q |
108 |
gatatcatcagagtcatggacaagagatttgtaaag |
143 |
Q |
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| T |
10797600 |
gatatcatcagagtcatggacaagagctttgtaaag |
10797635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 50079090 - 50079225
Alignment:
| Q |
8 |
tttactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
107 |
Q |
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| T |
50079090 |
tttactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
50079189 |
T |
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| Q |
108 |
gatatcatcagagtcatggacaagagatttgtaaag |
143 |
Q |
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| T |
50079190 |
gatatcatcagagtcatggacaagagctttgtaaag |
50079225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 13500954 - 13500857
Alignment:
| Q |
10 |
tactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
107 |
Q |
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| T |
13500954 |
tactgaccttcaacgaaagtgagtttcttgatggttccggcgccaccatttccttcaacaatgtcaatacttttgatgacatcaataacctttgggat |
13500857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 13484247 - 13484150
Alignment:
| Q |
10 |
tactaaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
107 |
Q |
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| T |
13484247 |
tactaaccttcaacgaaagtaagttttttgatggttccggcgccaccgtttccttcaacaatttcaatactttggatggcatcaataacctttgggat |
13484150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 13508657 - 13508588
Alignment:
| Q |
25 |
aaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaa |
94 |
Q |
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| T |
13508657 |
aaagtgagtttcttgatggttccggctccgccgtttccttcaacgatatcaatactcttgatggcatcaa |
13508588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 13489968 - 13489888
Alignment:
| Q |
14 |
aaccctcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaa |
94 |
Q |
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| T |
13489968 |
aaccttcaacgaaagtaagtttcttgatggttccggcgccaccgtttccttcaacaatttcaatactttggatggcatcaa |
13489888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 13514915 - 13514827
Alignment:
| Q |
19 |
tcaacgaaagtgagcttcttgatggtgccggcaccaccatttccctcgacggtttcaacactcttgatggcatcaacagcttttgggat |
107 |
Q |
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| T |
13514915 |
tcaacaaaagtaagtttcttgatggttccggcgccaccgttgccttcaacaatttcaacactcttgatgacatcaataacctttgggat |
13514827 |
T |
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