View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-18 (Length: 142)
Name: Solexa-NF5873-18
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 6e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 10367938 - 10368072
Alignment:
| Q |
8 |
gtaagagcaagttttttgtttgttcaaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattccc |
107 |
Q |
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| T |
10367938 |
gtaagaccaagttttatgtttgttcaaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattccc |
10368037 |
T |
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| Q |
108 |
atctcatgtatatgctaatccataccaccctcatc |
142 |
Q |
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| T |
10368038 |
atctcatgtatatgctaatccataccaccctcatc |
10368072 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 54155266 - 54155219
Alignment:
| Q |
43 |
aagcttgcagcatatgacatagaaagaggtttttggattgtaattcaa |
90 |
Q |
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| T |
54155266 |
aagcttgcagcatatgacatagaacgaggtttctggattgcaattcaa |
54155219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 43658309 - 43658375
Alignment:
| Q |
39 |
tgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattc |
105 |
Q |
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| T |
43658309 |
tgaaaagcttgtagcgtatgacatagaaaaagatttttggattgcaatacaaacatatctaccattc |
43658375 |
T |
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