View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5873-19 (Length: 141)

Name: Solexa-NF5873-19
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5873-19
Solexa-NF5873-19
[»] chr5 (13 HSPs)
chr5 (9-140)||(37533964-37534095)
chr5 (9-140)||(37399977-37400108)
chr5 (9-134)||(37712488-37712613)
chr5 (9-134)||(37824759-37824884)
chr5 (9-134)||(37697651-37697776)
chr5 (28-140)||(37436590-37436702)
chr5 (28-140)||(37595207-37595319)
chr5 (28-140)||(37640755-37640867)
chr5 (9-140)||(37703532-37703663)
chr5 (27-140)||(37392126-37392236)
chr5 (20-134)||(37429616-37429730)
chr5 (19-140)||(37381500-37381621)
chr5 (17-68)||(37412513-37412564)
[»] chr4 (2 HSPs)
chr4 (12-141)||(24216904-24217033)
chr4 (19-134)||(16842047-16842162)
[»] chr3 (1 HSPs)
chr3 (28-140)||(14553921-14554033)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 9e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 37533964 - 37534095
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  37533964 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgacaaatccaatctttg 37534063  T
Q  109 aagattaggtaaagagaggatgtcacatgaca 140  Q
    |||||||||||||||||||||||||| |||||    
T  37534064 aagattaggtaaagagaggatgtcacttgaca 37534095  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 37400108 - 37399977
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||    
T  37400108 aagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37400009  T
Q  109 aagattaggtaaagagaggatgtcacatgaca 140  Q
    |||||||||||||||||||||||||| |||||    
T  37400008 aagattaggtaaagagaggatgtcacttgaca 37399977  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 37712488 - 37712613
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||    
T  37712488 aagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37712587  T
Q  109 aagattaggtaaagagaggatgtcac 134  Q
    ||||||||||||||||||||||||||    
T  37712588 aagattaggtaaagagaggatgtcac 37712613  T

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Target: chr5; HSP #4
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 37824759 - 37824884
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  37824759 aagcagaggaagagaggtccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatgattaaatgacaaatccaatctttg 37824858  T
Q  109 aagattaggtaaagagaggatgtcac 134  Q
    ||||||||||||||||||||||||||    
T  37824859 aagattaggtaaagagaggatgtcac 37824884  T

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Target: chr5; HSP #5
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 37697651 - 37697776
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||    
T  37697651 aagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37697750  T
Q  109 aagattaggtaaagagaggatgtcac 134  Q
    ||||||||||||||||||||||||||    
T  37697751 aagattaggtaaagagaggatgtcac 37697776  T

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Target: chr5; HSP #6
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 37436590 - 37436702
Alignment:
Q  28 caagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggtaaagagagg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  37436590 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagagg 37436689  T
Q  128 atgtcacatgaca 140  Q
    ||||||| |||||    
T  37436690 atgtcacttgaca 37436702  T

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Target: chr5; HSP #7
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 37595207 - 37595319
Alignment:
Q  28 caagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggtaaagagagg 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  37595207 caagtaccttagaggagtgctcaagttggactttggaagttgaccactaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagagg 37595306  T
Q  128 atgtcacatgaca 140  Q
    ||||||| |||||    
T  37595307 atgtcacttgaca 37595319  T

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Target: chr5; HSP #8
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 37640755 - 37640867
Alignment:
Q  28 caagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggtaaagagagg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  37640755 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagagg 37640854  T
Q  128 atgtcacatgaca 140  Q
    ||||||| |||||    
T  37640855 atgtcacttgaca 37640867  T

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Target: chr5; HSP #9
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 37703532 - 37703663
Alignment:
Q  9 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttg 108  Q
    |||||||| ||||||||  |||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  37703532 aagcagaggaagagaggttcaagtatcttagaggagagctccagttggattttggaagttgaccactaaggttataattgaatgacaaatccaatctttg 37703631  T
Q  109 aagattaggtaaagagaggatgtcacatgaca 140  Q
    |||||||||||||||||||||||||| |||||    
T  37703632 aagattaggtaaagagaggatgtcacttgaca 37703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 37392236 - 37392126
Alignment:
Q  27 ccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggtaaagagag 126  Q
    |||||||||||||||||||||||||||| || |||||||||| ||| | ||| | || |||   ||||||||| | ||||||||||||||||||||||||    
T  37392236 ccaagtaccttagaggagtgctccagtttgattttggaagtttaccgctaagttcattatt---tgacaaatctagtctttgaagattaggtaaagagag 37392140  T
Q  127 gatgtcacatgaca 140  Q
    |||| ||| |||||    
T  37392139 gatggcacttgaca 37392126  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 37429616 - 37429730
Alignment:
Q  20 gagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggta 119  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||  |||| |||||  | |||| | |||||||| | |  ||||||||| ||||    
T  37429616 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 37429715  T
Q  120 aagagaggatgtcac 134  Q
    |||||||||||||||    
T  37429716 aagagaggatgtcac 37429730  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 37381621 - 37381500
Alignment:
Q  19 agagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggt 118  Q
    ||||||| |||||||||| | |||||||||||||||||| || ||||||||||  |  || |  | ||||||||| ||||| | | |||| |||||||||    
T  37381621 agagaggtccaagtacctcaaaggagtgctccagttggatttcggaagttgactgctcagatatttattagatgataaatctagtgtttggagattaggt 37381522  T
Q  119 aaagagaggatgtcacatgaca 140  Q
    |||||||||||||||| |||||    
T  37381521 aaagagaggatgtcacttgaca 37381500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 37412564 - 37412513
Alignment:
Q  17 aaagagaggaccaagtaccttagaggagtgctccagttggactttggaagtt 68  Q
    ||||||||  ||||||||||||||||||||||||||||| || |||||||||    
T  37412564 aaagagagatccaagtaccttagaggagtgctccagttgaacattggaagtt 37412513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 24217033 - 24216904
Alignment:
Q  12 cagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaag 111  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| |||||| || |||||||||||  | ||| ||||||||||| | | |||||||    
T  24217033 cagagaaagagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttaccacgaaggtcttgattcgatgacaaatctagtttttgaag 24216934  T
Q  112 attaggtaaagagaggatgtcacatgacat 141  Q
    ||| ||||||||||||||||||| ||||||    
T  24216933 atttggtaaagagaggatgtcacttgacat 24216904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 16842162 - 16842047
Alignment:
Q  19 agagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggt 118  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||  | ||||  ||||||||| | |||||||||||| |      
T  16842162 agagaggtacaagtaccttagaggagtgctccagttggattttggaagttgaccactaaggtcttgattatgtgacaaatctagtctttgaagatttgac 16842063  T
Q  119 aaagagaggatgtcac 134  Q
    |||||||| |||||||    
T  16842062 aaagagagtatgtcac 16842047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 14553921 - 14554033
Alignment:
Q  28 caagtaccttagaggagtgctccagttggactttggaagttgaccacgaaggttataattagatgacaaatccaatctttgaagattaggtaaagagagg 127  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||| |||   || ||||  |  |||||| | | |||||||||| || ||||||||     
T  14553921 caagtaccttagaggagtactccagttggattttggaagttgaccactaagaccatcattacctaccaaatctagtttttgaagatttggcaaagagagt 14554020  T
Q  128 atgtcacatgaca 140  Q
    ||||||| |||||    
T  14554021 atgtcacttgaca 14554033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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