View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-20 (Length: 140)
Name: Solexa-NF5873-20
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-20 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 8e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 47319753 - 47319639
Alignment:
| Q |
22 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47319753 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
47319654 |
T |
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| Q |
122 |
aaacttttccttctt |
136 |
Q |
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||||||||||||||| |
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| T |
47319653 |
aaacttttccttctt |
47319639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 47316243 - 47316129
Alignment:
| Q |
22 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
121 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||| ||| || || |
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| T |
47316243 |
aatcttgatgttctttcaacaactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacgaattcttc |
47316144 |
T |
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| Q |
122 |
aaacttttccttctt |
136 |
Q |
| |
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| || ||||| |||| |
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| T |
47316143 |
atacatttccctctt |
47316129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 47314504 - 47314399
Alignment:
| Q |
22 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
121 |
Q |
| |
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|||||||||| ||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||| || || |
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| T |
47314504 |
aatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggcaccaaaatcatgtaggagtttcatgaactcgtc |
47314405 |
T |
|
| Q |
122 |
aaactt |
127 |
Q |
| |
|
|||||| |
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| T |
47314404 |
aaactt |
47314399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 47319966 - 47319852
Alignment:
| Q |
22 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
121 |
Q |
| |
|
|||||| ||| ||||| ||||||||||| | ||||||||||| ||||| |||||||||||||||| || ||||| || |||||||| ||| ||||| |
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| T |
47319966 |
aatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatc |
47319867 |
T |
|
| Q |
122 |
aaacttttccttctt |
136 |
Q |
| |
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| |||||||| |||| |
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| T |
47319866 |
atacttttccatctt |
47319852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 47316490 - 47316387
Alignment:
| Q |
33 |
tctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttcct |
132 |
Q |
| |
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||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| | ||||| ||||||||||| ||| |||| ||||||||| |
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| T |
47316490 |
tctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttcca |
47316391 |
T |
|
| Q |
133 |
tctt |
136 |
Q |
| |
|
|||| |
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|
| T |
47316390 |
tctt |
47316387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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