View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5873-21 (Length: 139)

Name: Solexa-NF5873-21
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5873-21
Solexa-NF5873-21
[»] chr4 (19 HSPs)
chr4 (61-139)||(50080421-50080501)
chr4 (1-62)||(43943403-43943464)
chr4 (61-121)||(4058822-4058884)
chr4 (61-121)||(29203613-29203675)
chr4 (61-118)||(55580777-55580836)
chr4 (61-121)||(2229354-2229416)
chr4 (61-121)||(39078263-39078325)
chr4 (61-121)||(47867986-47868048)
chr4 (64-123)||(12002614-12002675)
chr4 (61-119)||(20281698-20281758)
chr4 (61-121)||(7654724-7654786)
chr4 (61-121)||(24940472-24940534)
chr4 (61-121)||(26916432-26916494)
chr4 (61-121)||(41414594-41414656)
chr4 (89-126)||(14583866-14583903)
chr4 (61-121)||(5483261-5483323)
chr4 (61-121)||(14332867-14332929)
chr4 (61-121)||(16473855-16473917)
chr4 (61-121)||(35310725-35310787)
[»] chr1 (16 HSPs)
chr1 (61-121)||(15959630-15959692)
chr1 (61-131)||(52985042-52985114)
chr1 (61-121)||(2126147-2126209)
chr1 (61-121)||(24190578-24190640)
chr1 (61-121)||(35691502-35691563)
chr1 (61-117)||(6785565-6785622)
chr1 (61-121)||(6786947-6787009)
chr1 (61-121)||(13136544-13136606)
chr1 (61-121)||(32623995-32624057)
chr1 (61-121)||(33369659-33369721)
chr1 (89-126)||(1034994-1035031)
chr1 (90-126)||(298653-298689)
chr1 (61-121)||(11241136-11241198)
chr1 (61-121)||(28016736-28016798)
chr1 (61-121)||(39555576-39555638)
chr1 (61-121)||(46543091-46543153)
[»] chr6 (12 HSPs)
chr6 (1-62)||(26615378-26615438)
chr6 (1-62)||(26721306-26721366)
chr6 (61-121)||(21542527-21542589)
chr6 (61-121)||(35129044-35129106)
chr6 (64-121)||(9428857-9428916)
chr6 (61-126)||(17751729-17751796)
chr6 (61-121)||(11082235-11082297)
chr6 (92-126)||(12461414-12461448)
chr6 (64-135)||(30794168-30794241)
chr6 (72-126)||(14573113-14573169)
chr6 (61-121)||(3095710-3095772)
chr6 (61-121)||(34177631-34177693)
[»] chr8 (14 HSPs)
chr8 (61-121)||(34890165-34890227)
chr8 (64-121)||(7858638-7858697)
chr8 (61-121)||(7022394-7022456)
chr8 (61-121)||(13143936-13143998)
chr8 (61-121)||(43216338-43216400)
chr8 (61-121)||(26483639-26483701)
chr8 (61-126)||(29920254-29920321)
chr8 (61-121)||(7499822-7499884)
chr8 (61-121)||(8709777-8709839)
chr8 (61-121)||(15824628-15824690)
chr8 (61-117)||(24892948-24893006)
chr8 (61-121)||(30575825-30575887)
chr8 (61-121)||(34158281-34158343)
chr8 (61-121)||(36190879-36190941)
[»] chr7 (11 HSPs)
chr7 (61-121)||(18102639-18102701)
chr7 (61-121)||(19912758-19912820)
chr7 (61-121)||(6191154-6191216)
chr7 (61-121)||(46760246-46760308)
chr7 (1-62)||(47933031-47933092)
chr7 (61-121)||(12632333-12632395)
chr7 (61-121)||(14805978-14806040)
chr7 (61-121)||(15252972-15253034)
chr7 (61-121)||(45486064-45486126)
chr7 (64-139)||(44682989-44683066)
chr7 (61-121)||(25944685-25944747)
[»] chr5 (10 HSPs)
chr5 (61-121)||(6686494-6686556)
chr5 (61-121)||(20644123-20644185)
chr5 (61-118)||(20039211-20039270)
chr5 (61-121)||(42273756-42273818)
chr5 (61-121)||(43589952-43590014)
chr5 (64-121)||(37562751-37562810)
chr5 (61-121)||(12792776-12792838)
chr5 (61-121)||(11261874-11261936)
chr5 (61-121)||(12729875-12729936)
chr5 (61-117)||(34425439-34425497)
[»] chr3 (20 HSPs)
chr3 (61-121)||(54464845-54464907)
chr3 (61-121)||(14752157-14752219)
chr3 (61-121)||(46711607-46711669)
chr3 (61-120)||(31837032-31837093)
chr3 (1-62)||(54945833-54945894)
chr3 (64-121)||(35963268-35963327)
chr3 (65-126)||(47115966-47116029)
chr3 (61-120)||(6075194-6075255)
chr3 (64-123)||(26208130-26208191)
chr3 (63-121)||(37042366-37042426)
chr3 (71-121)||(50730232-50730284)
chr3 (71-121)||(50782570-50782622)
chr3 (89-121)||(2927433-2927465)
chr3 (61-121)||(9264664-9264726)
chr3 (61-121)||(11054260-11054322)
chr3 (61-121)||(28875519-28875581)
chr3 (61-121)||(29235300-29235362)
chr3 (61-121)||(30189684-30189746)
chr3 (61-121)||(47864304-47864366)
chr3 (61-121)||(50650986-50651048)
[»] chr2 (16 HSPs)
chr2 (61-139)||(9864689-9864770)
chr2 (61-139)||(24204500-24204580)
chr2 (64-126)||(35023010-35023074)
chr2 (61-121)||(19264209-19264271)
chr2 (61-121)||(35517232-35517294)
chr2 (63-121)||(7645216-7645276)
chr2 (61-121)||(45660474-45660539)
chr2 (64-125)||(35115788-35115851)
chr2 (61-121)||(6110188-6110250)
chr2 (61-121)||(28599137-28599199)
chr2 (61-120)||(12938351-12938412)
chr2 (64-126)||(44455101-44455165)
chr2 (63-126)||(4707532-4707594)
chr2 (89-136)||(11825333-11825380)
chr2 (61-121)||(43415510-43415572)
chr2 (61-121)||(45085366-45085428)
[»] scaffold0062 (1 HSPs)
scaffold0062 (61-121)||(44761-44823)
[»] scaffold0045 (1 HSPs)
scaffold0045 (61-121)||(78066-78128)
[»] scaffold0300 (1 HSPs)
scaffold0300 (61-119)||(565-625)
[»] scaffold0005 (1 HSPs)
scaffold0005 (89-126)||(233472-233509)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 50080501 - 50080421
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgtttagcttacaa 139  Q
    |||||||||||||||||||||||| ||   ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  50080501 aagaaaacacaaaaaattatactcaaaattcttatgttttagttttcttaataagtgtgatttgatttgtttagcttacaa 50080421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43943464 - 43943403
Alignment:
Q  1 caaaaagaaaataaatatagatgtgaacgattatcattacatttcttacaacctttcattaa 62  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||||||||  |||||||||    
T  43943464 caaaaagaaaataaatatagacgtgagcaattatcattacatttcttacaatgtttcattaa 43943403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 4058822 - 4058884
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  4058822 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 4058884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 29203613 - 29203675
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  29203613 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtgattt 29203675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 55580777 - 55580836
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtga 118  Q
    ||||||||| |||||| ||||||||||   ||||||||||||||||||||||||||||||    
T  55580777 aagaaaacaaaaaaaactatactccaaattcttatgtttcagttttcttaataaatgtga 55580836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 2229354 - 2229416
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  2229354 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 2229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 39078263 - 39078325
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  39078263 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 39078325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 47867986 - 47868048
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  47867986 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 47868048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 12002675 - 12002614
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttga 123  Q
    ||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||||    
T  12002675 aaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgatttga 12002614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 20281698 - 20281758
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgat 119  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||    
T  20281698 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgat 20281758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 7654724 - 7654786
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||  ||  |||||| |||||||||||||| ||||||||    
T  7654724 aagaaaacacaaaaaactatactccaaatttttatgttttagttttcttaataagtgtgattt 7654786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 24940472 - 24940534
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||| |||||||| ||||||||||   |||| |||| |||||||||||||||||||||||    
T  24940472 aagaaaatacaaaaaactatactccaaattcttacgttttagttttcttaataaatgtgattt 24940534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 26916432 - 26916494
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||||  |||||||||   ||||||||| |||||||||||||| ||||||||    
T  26916432 aagaaaacacaaaaaaccatactccaaattcttatgttttagttttcttaataagtgtgattt 26916494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 41414656 - 41414594
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||||||||    ||||||||| |||||||||||||| ||||||||    
T  41414656 aagaaaacacaaaaaactatactccatattcttatgttttagttttcttaataagtgtgattt 41414594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 14583866 - 14583903
Alignment:
Q  89 cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  14583866 cttatattttagttttcttaataaatgtgatttgattt 14583903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 5483323 - 5483261
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||||||||||| |||    |||||||| ||||||||||| || ||||||||    
T  5483323 aagaaaacacaaaaaattatacttcaaatttttatgttttagttttcttaacaagtgtgattt 5483261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 14332867 - 14332929
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||||  ||| |||||   ||||||||| |||||||||||||| ||||||||    
T  14332867 aagaaaacacaaaaaaccatattccaaattcttatgttttagttttcttaataagtgtgattt 14332929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 16473855 - 16473917
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||| ||| |||||||||||||| ||| ||||    
T  16473855 aagaaaacacaaaaaactatactccaaattcttatattttagttttcttaataagtgtaattt 16473917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 35310787 - 35310725
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||| || |||   ||||||||| |||||||||||||||| ||||||    
T  35310787 aagaaaacacaaaaaactatgctacaaattcttatgttttagttttcttaataaatatgattt 35310725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 15959692 - 15959630
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  15959692 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataaatgtgattt 15959630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 52985042 - 52985114
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgttta 131  Q
    |||||||||||||||| ||||||||||   ||||||| | |||||||||||||| ||||||||||||| ||||    
T  52985042 aagaaaacacaaaaaactatactccaaattcttatgtattagttttcttaataagtgtgatttgatttattta 52985114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 2126147 - 2126209
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||| |||||   ||||||||| |||||||||||||||||||||||    
T  2126147 aagaaaacacaaaaaactatattccaaattcttatgttttagttttcttaataaatgtgattt 2126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 24190578 - 24190640
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  24190578 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 24190640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 35691502 - 35691563
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| || ||||||||||||||||||||    
T  35691502 aagaaaacacaaaaaattatactccaaattcttatgttttag-tttcttaataaatgtgattt 35691563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 6785565 - 6785622
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa-ccttatgtttcagttttcttaataaatgtg 117  Q
    |||||||||||||||| ||||||||||  ||||||||| |||||||||||||| ||||    
T  6785565 aagaaaacacaaaaaactatactccaattcttatgttttagttttcttaataagtgtg 6785622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6786947 - 6787009
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   || |||||| |||||||||||||| ||||||||    
T  6786947 aagaaaacacaaaaaactatactccaaattctcatgttttagttttcttaataagtgtgattt 6787009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 13136606 - 13136544
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| | |||||||||||| ||||||||    
T  13136606 aagaaaacacaaaaaactatactccaaattcttatgttttaattttcttaataagtgtgattt 13136544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 32624057 - 32623995
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| || |||||||   ||||||||| |||||||||||||| ||||||||    
T  32624057 aagaaaacacaaaaaactacactccaaattcttatgttttagttttcttaataattgtgattt 32623995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 33369659 - 33369721
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||  ||  |||||| |||||||||||||| ||||||||    
T  33369659 aagaaaacacaaaaaactatactccaaatttttatgttttagttttcttaataagtgtgattt 33369721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 1034994 - 1035031
Alignment:
Q  89 cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  1034994 cttatgttttaattttcttaataaatgtgatttgattt 1035031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 298689 - 298653
Alignment:
Q  90 ttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||||||| |||||||||||||||| |||||||||||    
T  298689 ttatgttttagttttcttaataaatatgatttgattt 298653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 11241136 - 11241198
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| | |||| ||||||| ||||||||    
T  11241136 aagaaaacacaaaaaactatactccaaattcttatgttttaatttttttaataagtgtgattt 11241198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 28016798 - 28016736
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||| ||||| ||||||| ||   ||||||||| |||||||||||||| ||||||||    
T  28016798 aagaaaacaccaaaaactatactctaaattcttatgttttagttttcttaataagtgtgattt 28016736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 39555638 - 39555576
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||  ||||||||||   ||||||||| | |||||||||||| ||||||||    
T  39555638 aagaaaacacaaaaacctatactccaaattcttatgttttaattttcttaataagtgtgattt 39555576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 46543091 - 46543153
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||    |||||||| |||||| ||||||||| ||||||    
T  46543091 aagaaaacacaaaaaactatactccaaatttttatgttttagtttttttaataaatatgattt 46543153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26615378 - 26615438
Alignment:
Q  1 caaaaagaaaataaatatagatgtgaacgattatcattacatttcttacaacctttcattaa 62  Q
    |||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||    
T  26615378 caaaaagaaaataa-taaagatgcgaacaattatcattacatttcttacaacctttcattaa 26615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26721306 - 26721366
Alignment:
Q  1 caaaaagaaaataaatatagatgtgaacgattatcattacatttcttacaacctttcattaa 62  Q
    |||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||    
T  26721306 caaaaagaaaataa-taaagatgcgaacaattatcattacatttcttacaacctttcattaa 26721366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 21542527 - 21542589
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  21542527 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 21542589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 35129106 - 35129044
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  35129106 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 35129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 9428857 - 9428916
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||| |||   ||||||||| |||||| ||||||||||||||||    
T  9428857 aaaacacaaaaaattatacttcaaattcttatgttttagttttattaataaatgtgattt 9428916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 17751796 - 17751729
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||||||||||||||| ||||||||||   ||||| ||| | |||||||||||| |||||||||||||    
T  17751796 aagaaaacacaaaaaactatactccaaattcttatattttaattttcttaataagtgtgatttgattt 17751729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 11082297 - 11082235
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||| ||||    
T  11082297 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgttattt 11082235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 12461448 - 12461414
Alignment:
Q  92 atgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||||| ||||||||||||||||||||||||||||    
T  12461448 atgttttagttttcttaataaatgtgatttgattt 12461414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 30794241 - 30794168
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgtttagctt 135  Q
    |||||| ||||||||||||| |||   ||||| ||| |||||||||||||||| ||||||||||| ||| ||||    
T  30794241 aaaacataaaaaattatacttcaaattcttatattttagttttcttaataaatctgatttgattttttttgctt 30794168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 14573169 - 14573113
Alignment:
Q  72 aaaaattatactccaacct--tatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||||||||||||||  |  ||| ||| ||||||||||||||||||||||||||||    
T  14573169 aaaaattatactccaaattcatatattttagttttcttaataaatgtgatttgattt 14573113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 3095772 - 3095710
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||    ||||| || |||||||||||||||| ||||||    
T  3095772 aagaaaacacaaaaaactatactccaaatttttatgctttagttttcttaataaatatgattt 3095710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 34177693 - 34177631
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||| |||||   ||||||||| | |||||||||||| ||||||||    
T  34177693 aagaaaacacaaaaaactatattccaaattcttatgttttaattttcttaataagtgtgattt 34177631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 34890227 - 34890165
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  34890227 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtgattt 34890165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 7858638 - 7858697
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  7858638 aaaacacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 7858697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 7022456 - 7022394
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||  ||  |||||| |||||||||||||||||||||||    
T  7022456 aagaaaacacaaaaaactatactccaaatttttatgttttagttttcttaataaatgtgattt 7022394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 13143998 - 13143936
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  13143998 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 13143936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 43216400 - 43216338
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  43216400 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 43216338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 26483639 - 26483701
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||||| |||   ||||||||| |||||||||||||| ||||||||    
T  26483639 aagaaaacacaaaaaactatacttcaaattcttatgttttagttttcttaataagtgtgattt 26483701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 29920321 - 29920254
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||| ||||||||||||| |||| |||   ||||||||| |||||||||||||| |||||||| ||||    
T  29920321 aagataacacaaaaaattgtacttcaaattcttatgttttagttttcttaataagtgtgatttaattt 29920254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 7499822 - 7499884
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacct--tatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||| |||||| |||||||| ||  |  ||||||| |||||||||||||||||||||||    
T  7499822 aagaaaacgcaaaaagttatactctaaattcctatgttttagttttcttaataaatgtgattt 7499884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 8709839 - 8709777
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||| ||| ||| ||||||||    
T  8709839 aagaaaacacaaaaaactatactccaaattcttatgttttagtttttttattaagtgtgattt 8709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 15824690 - 15824628
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||||| |||   ||||||||| |||||||||| |||||| |||||    
T  15824690 aagaaaacacaaaaaactatacttcaaattcttatgttttagttttcttactaaatgcgattt 15824628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 24892948 - 24893006
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtg 117  Q
    |||||||||||||||| ||||||| ||   ||||||||| |||||||||||||| ||||    
T  24892948 aagaaaacacaaaaaactatactctaaattcttatgtttaagttttcttaataagtgtg 24893006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 30575887 - 30575825
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| | ||||||||  ||  |||||| |||||||||||||| ||||||||    
T  30575887 aagaaaacacaaaaaactttactccaaatttttatgttttagttttcttaataagtgtgattt 30575825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 34158343 - 34158281
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||| ||| |||||||||    ||||||||| | |||||||||||||||||||||    
T  34158343 aagaaaacacaacaaactatactccagattcttatgttttaattttcttaataaatgtgattt 34158281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 36190879 - 36190941
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||| ||   ||||||||| ||||||||||| || ||||||||    
T  36190879 aagaaaacacaaaaaactatactctaaattcttatgttttagttttcttaacaagtgtgattt 36190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 18102639 - 18102701
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  18102639 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtgattt 18102701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 19912820 - 19912758
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  19912820 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 19912758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6191154 - 6191216
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  6191154 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 6191216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 46760308 - 46760246
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  46760308 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 46760246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47933031 - 47933092
Alignment:
Q  1 caaaaagaaaataaatatagatgtgaacgattatcattacatttcttacaacctttcattaa 62  Q
    |||| ||||||||||||||||  ||| | |||||||||||||||| |||||| |||||||||    
T  47933031 caaatagaaaataaatatagacatgagcaattatcattacatttcatacaacgtttcattaa 47933092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 12632395 - 12632333
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||| |||||| ||||||||||   ||||||||| | |||||||||||||||||||||    
T  12632395 aagaaaacataaaaaactatactccaaattcttatgttttaattttcttaataaatgtgattt 12632333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 14805978 - 14806040
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||| |||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  14805978 aagaaaatacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 14806040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 15252972 - 15253034
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||| |||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  15252972 aagaaaatacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 15253034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 45486064 - 45486126
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||  ||  |||||| |||||||||||||| ||||||||    
T  45486064 aagaaaacacaaaaaactatactccaaatttttatgttttagttttcttaataagtgtgattt 45486126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 44682989 - 44683066
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgtttagcttacaa 139  Q
    ||||||||||| ||||||||||||   ||||| ||  |||||||||||| ||||||||||||||| ||  ||||||||    
T  44682989 aaaacacaaaatattatactccaaattcttattttctagttttcttaatgaatgtgatttgattttttatgcttacaa 44683066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 25944685 - 25944747
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||| |||||||||||   ||||| ||| |||||||||||||| ||| ||||    
T  25944685 aagaaaacacaaaaacttatactccaaattcttatattttagttttcttaataagtgttattt 25944747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6686494 - 6686556
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  6686494 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 6686556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 20644123 - 20644185
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  20644123 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtgattt 20644185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 20039211 - 20039270
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtga 118  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||| |||||    
T  20039211 aagaaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 20039270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 42273756 - 42273818
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  42273756 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 42273818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 43590014 - 43589952
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  43590014 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 43589952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 37562810 - 37562751
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  37562810 aaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 37562751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 12792838 - 12792776
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||| ||||||| ||||||||    
T  12792838 aagaaaacacaaaaaactatactccaatttcttatgttttagtttttttaataagtgtgattt 12792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 11261936 - 11261874
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   || |||| | ||||| |||||||| ||||||||    
T  11261936 aagaaaacacaaaaaattatactccaaattctcatgtgttagtttacttaataagtgtgattt 11261874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 12729936 - 12729875
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||| ||||||| ||||||||    
T  12729936 aagaaaacacaaaaaactatactccaatttcttatgttttagtttt-ttaataagtgtgattt 12729875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 34425439 - 34425497
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtg 117  Q
    |||||||||||||||| |||||| |||   ||||||||| |||||||||||||| ||||    
T  34425439 aagaaaacacaaaaaactatacttcaaattcttatgttttagttttcttaataagtgtg 34425497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 54464907 - 54464845
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||||||||||| |||   ||||||||| |||||||||||||||||||||||    
T  54464907 aagaaaacacaaaaaattatacttcaaattcttatgttttagttttcttaataaatgtgattt 54464845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 14752219 - 14752157
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||| ||||| ||||||||    
T  14752219 aagaaaacacaaaaaattatactccaaattcttatgttttagttttctaaataagtgtgattt 14752157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 46711669 - 46711607
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||||||   |||||||||  ||||||||||||| ||||||||    
T  46711669 aagaaaacacaaaaaattatactccaaattcttatgttttcgttttcttaataagtgtgattt 46711607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 31837032 - 31837093
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatt 120  Q
    ||||||| |||||||| |||||||||||  ||||||||| |||||||||||||| |||||||    
T  31837032 aagaaaatacaaaaaactatactccaacttcttatgttttagttttcttaataagtgtgatt 31837093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54945833 - 54945894
Alignment:
Q  1 caaaaagaaaataaatatagatgtgaacgattatcattacatttcttacaacctttcattaa 62  Q
    |||| ||||||||||||||||  ||| | |||||||||||||||| |||||| |||||||||    
T  54945833 caaatagaaaataaatatagacatgagcaattatcattacatttcatacaacgtttcattaa 54945894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 35963268 - 35963327
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  35963268 aaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 35963327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 47115966 - 47116029
Alignment:
Q  65 aaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||||||||||||||||||| ||   ||||||||| |||||| |||||||||||||||| ||||    
T  47115966 aaacacaaaaaattatactctaaattcttatgttttagtttttttaataaatgtgatttcattt 47116029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 6075194 - 6075255
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgatt 120  Q
    |||||||||||||||||||||||||||   |||||  || |||||||||||||| |||||||    
T  6075194 aagaaaacacaaaaaattatactccaaattcttatactttagttttcttaataagtgtgatt 6075255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 26208130 - 26208191
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttga 123  Q
    ||||||||||||| ||||||| ||   ||||||||| |||||||||||||| ||||||||||    
T  26208130 aaaacacaaaaaactatactctaaattcttatgttttagttttcttaataagtgtgatttga 26208191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 37042426 - 37042366
Alignment:
Q  63 gaaaacacaaaaaattatactccaacctt--atgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||| ||||||||||  ||  |||||| |||||||||||||| ||||||||    
T  37042426 gaaaacacaaaaaactatactccaaatttttatgttttagttttcttaataagtgtgattt 37042366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 50730232 - 50730284
Alignment:
Q  71 aaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  50730232 aaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 50730284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 50782622 - 50782570
Alignment:
Q  71 aaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||| ||||||||||   ||||||||| |||||||||||||||||||||||    
T  50782622 aaaaaactatactccaaattcttatgttttagttttcttaataaatgtgattt 50782570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 2927433 - 2927465
Alignment:
Q  89 cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  2927433 cttatgttttagttttcttaataaatgtgattt 2927465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 9264664 - 9264726
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacct--tatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||| ||  |  ||||||| |||||||||||||| ||||||||    
T  9264664 aagaaaacacaaaaaactatactcaaaattcatatgttttagttttcttaataagtgtgattt 9264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 11054322 - 11054260
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||| ||| |||||||||||||| | ||||||    
T  11054322 aagaaaacacaaaaaactatactccaaattcttatattttagttttcttaataagtatgattt 11054260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 28875519 - 28875581
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||| || |||| |||||   |||||| || |||||||||||||||||||||||    
T  28875519 aagaaaacacaaataactatagtccaaattcttatgctttagttttcttaataaatgtgattt 28875581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 29235300 - 29235362
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||| |||||||| ||||||| ||   ||||||||| |||||||||||||| ||||||||    
T  29235300 aagaaaatacaaaaaactatactctaaattcttatgttttagttttcttaataagtgtgattt 29235362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 30189684 - 30189746
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| | |||| ||||||| ||||||||    
T  30189684 aagaaaacacaaaaaactatactccaaattcttatgttttaatttttttaataagtgtgattt 30189746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 47864304 - 47864366
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||  ||||||| ||||||||||   || |||||| |||||||||||||||||||||||    
T  47864304 aagaaaatgcaaaaaactatactccaaattctcatgttttagttttcttaataaatgtgattt 47864366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 50651048 - 50650986
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| |||| | |||   ||||||||| |||||||||||||| ||||||||    
T  50651048 aagaaaacacaaaaaactatatttcaaattcttatgttttagttttcttaataagtgtgattt 50650986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 9864770 - 9864689
Alignment:
Q  61 aagaaaacacaaaaaat-tatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgtttagcttacaa 139  Q
    ||||||||||||||||  ||||||||||   ||||||||| |||||||||||||| ||||||||||||| ||| ||||||||    
T  9864770 aagaaaacacaaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgatttgatttattttgcttacaa 9864689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 24204580 - 24204500
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatttgtttagcttacaa 139  Q
    |||||||||||| ||||||||||||||   |||| |||| ||||||||| |||||||||||||||||| |||  |||||||    
T  24204580 aagaaaacacaataaattatactccaaattcttaggttttagttttcttgataaatgtgatttgattttttttacttacaa 24204500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 35023010 - 35023074
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||||||||||||||||||||||   ||||||||| |||||||||||||| ||||| |||||||    
T  35023010 aaaacacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtgaattgattt 35023074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 19264209 - 19264271
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||||||||||| ||   ||||||||| |||||||||||||| ||||||||    
T  19264209 aagaaaacacaaaaaattatactctaaattcttatgttttagttttcttaataagtgtgattt 19264271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 35517232 - 35517294
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  35517232 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgattt 35517294  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 7645276 - 7645216
Alignment:
Q  63 gaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||| ||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  7645276 gaaaacacaaaatattatactccaaattcttatgttttagttttcttaataagtgtgattt 7645216  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 45660474 - 45660539
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac-----cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||      ||||||||| |||||||||||||||||||||||    
T  45660474 aagaaaacacaaaaaactatactccaaattattcttatgttttagttttcttaataaatgtgattt 45660539  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 35115851 - 35115788
Alignment:
Q  64 aaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatttgatt 125  Q
    ||||||||||||| ||||||||||   ||||||||| |||| ||||||||| ||||||||||||    
T  35115851 aaaacacaaaaaactatactccaaattcttatgttttagttctcttaataagtgtgatttgatt 35115788  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 6110250 - 6110188
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||  ||||||||||   ||||||||| |||||||||||||| ||||||||    
T  6110250 aagaaaacacaaaaagctatactccaaattcttatgttttagttttcttaataagtgtgattt 6110188  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 28599199 - 28599137
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||   ||||||||| |||||||||||||| ||| ||||    
T  28599199 aagaaaacacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtaattt 28599137  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 12938351 - 12938412
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgatt 120  Q
    |||||| ||||||||| ||||||||||   ||||||||| |||||||||||||| |||||||    
T  12938351 aagaaagcacaaaaaactatactccaaattcttatgttttagttttcttaataagtgtgatt 12938412  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 44455101 - 44455165
Alignment:
Q  64 aaaacacaaaaaattatactccaacct--tatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||||||||||| ||||||||||  |  ||| ||| |||||||||||||||| |||||||||||    
T  44455101 aaaacacaaaaaactatactccaaattcatatattttagttttcttaataaatatgatttgattt 44455165  T

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Target: chr2; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 4707532 - 4707594
Alignment:
Q  63 gaaaacacaaaaaattatactccaaccttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    |||||||||||||| ||||||||||  | |||||| ||| |||||||||||||||  |||||||    
T  4707532 gaaaacacaaaaaactatactccaa-atcatgttttagtgttcttaataaatgtggattgattt 4707594  T

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Target: chr2; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 11825380 - 11825333
Alignment:
Q  89 cttatgtttcagttttcttaataaatgtgatttgatttgtttagctta 136  Q
    ||||||||| |||||||||||||| |||||||||| || ||| |||||    
T  11825380 cttatgttttagttttcttaataagtgtgatttgagtttttttgctta 11825333  T

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Target: chr2; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 43415510 - 43415572
Alignment:
Q  61 aagaaaacacaaaaaattatactccaa--ccttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||||||||||||||||||| |||   ||||| ||| |||||||||| ||| ||||||||    
T  43415510 aagaaaacacaaaaaattatacttcaaattcttatattttagttttcttagtaagtgtgattt 43415572  T

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Target: chr2; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 45085366 - 45085428
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    ||||||| |||||||| ||||||||||   ||||||||| | |||||||||||| ||||||||    
T  45085366 aagaaaatacaaaaaactatactccaaattcttatgttttaattttcttaataagtgtgattt 45085428  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 44823 - 44761
Alignment:
Q  61 aagaaaacacaaaaaattatactccaacct--tatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||||||  |  ||||||| |||||||||||||||||||||||    
T  44823 aagaaaacacaaaaaaatatactccaaattattatgttttagttttcttaataaatgtgattt 44761  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 78066 - 78128
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgattt 121  Q
    |||||||||||||||| ||||||| ||   ||||||||| |||||||||||||| ||||||||    
T  78066 aagaaaacacaaaaaactatactctaaattcttatgttttagttttcttaataagtgtgattt 78128  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 625 - 565
Alignment:
Q  61 aagaaaacacaaaaaattatactccaac--cttatgtttcagttttcttaataaatgtgat 119  Q
    ||||||||||| |||| ||||||||||   ||||||||| |||||||||||||| ||||||    
T  625 aagaaaacacataaaactatactccaaattcttatgttttagttttcttaataagtgtgat 565  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 233509 - 233472
Alignment:
Q  89 cttatgtttcagttttcttaataaatgtgatttgattt 126  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  233509 cttatattttagttttcttaataaatgtgatttgattt 233472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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