View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-23 (Length: 135)
Name: Solexa-NF5873-23
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-23 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 8e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 51034910 - 51035037
Alignment:
| Q |
8 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcatctagcttgctt |
107 |
Q |
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| T |
51034910 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttctatgataaatctaacataacttggaatctcctctagcttgctt |
51035009 |
T |
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| Q |
108 |
aacacatattgttttagtttagcaggat |
135 |
Q |
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| T |
51035010 |
aacacatattgttttagtttagcaggat |
51035037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 51068953 - 51069078
Alignment:
| Q |
8 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcatctagcttgctt |
107 |
Q |
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| T |
51068953 |
ccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttttctatgatagatataacattacttggcatattctctagcttgttt |
51069052 |
T |
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| Q |
108 |
aacacatattgttttagtttagcagg |
133 |
Q |
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| T |
51069053 |
aacacatattgcttcagtttagcagg |
51069078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 51030632 - 51030757
Alignment:
| Q |
8 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcatctagcttgctt |
107 |
Q |
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| T |
51030632 |
ccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgttt |
51030731 |
T |
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| Q |
108 |
aacacatattgttttagtttagcagg |
133 |
Q |
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| T |
51030732 |
aacacatattgttttagcttagcagg |
51030757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 51063384 - 51063509
Alignment:
| Q |
8 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcatctagcttgctt |
107 |
Q |
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|||||||||||||| ||||||||||||||| || || |||||||| | |||||||| |||| | | |||||| |||||| |||| |||| |||| || |
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| T |
51063384 |
ccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgttt |
51063483 |
T |
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| Q |
108 |
aacacatattgttttagtttagcagg |
133 |
Q |
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| T |
51063484 |
aacacatattgttttagcttagcagg |
51063509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 40618024 - 40617906
Alignment:
| Q |
12 |
ggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcatctagcttgcttaaca |
111 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| | ||||||||| |||| | ||||||||| |||||| || | |||| ||| |||| | |
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| T |
40618024 |
ggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctatgaaagatctaacatcacttggcattttctctaacttctttaata |
40617925 |
T |
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| Q |
112 |
catattgttttagtttagc |
130 |
Q |
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|||||| ||| |||||||| |
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| T |
40617924 |
catattctttcagtttagc |
40617906 |
T |
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