View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5873-3 (Length: 216)

Name: Solexa-NF5873-3
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5873-3
Solexa-NF5873-3
[»] chr3 (5 HSPs)
chr3 (7-206)||(41056910-41057110)
chr3 (60-105)||(402645-402690)
chr3 (61-117)||(34632151-34632206)
chr3 (61-117)||(34638058-34638113)
chr3 (25-96)||(35127484-35127555)
[»] chr5 (6 HSPs)
chr5 (27-96)||(41059608-41059677)
chr5 (18-125)||(28776855-28776960)
chr5 (38-96)||(39105363-39105421)
chr5 (38-105)||(7984877-7984944)
chr5 (17-96)||(20982248-20982326)
chr5 (17-96)||(42573892-42573971)
[»] chr6 (2 HSPs)
chr6 (19-95)||(31686558-31686634)
chr6 (16-112)||(35069430-35069525)
[»] chr4 (1 HSPs)
chr4 (18-114)||(17883947-17884042)
[»] chr2 (1 HSPs)
chr2 (25-88)||(44589922-44589984)
[»] chr1 (2 HSPs)
chr1 (55-105)||(15942249-15942299)
chr1 (17-96)||(5894276-5894354)
[»] chr8 (3 HSPs)
chr8 (26-95)||(2840246-2840315)
chr8 (26-95)||(2844933-2845002)
chr8 (39-95)||(2833444-2833500)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 3e-84; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-84
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 41056910 - 41057110
Alignment:
Q  7 aatatataaccctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttctttagaaaaaa 106  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41056910 aatatataaccctgcttagataaacaacttcatttgtagcttaaagtataagggtttatcatgataattgcttaagtataagctatttctttagaaaaaa 41057009  T
Q  107 gataaaattaatttgttttcatmkatgct-ttcgatgttttcataagctatatatgggtgctgcatatgtacggtgcctgttattgtagtttgtttctct 205  Q
    ||||||||||||||||||||||  | ||| |  | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41057010 gataaaattaatttgttttcatataagctataagttgttttcataagctatatatgggtgccgcatatgtacggtgcctgttattgtagtttgtttctct 41057109  T
Q  206 g 206  Q
    |    
T  41057110 g 41057110  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 402690 - 402645
Alignment:
Q  60 gcttatcatgataattgcttaagtataagctatttctttagaaaaa 105  Q
    ||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  402690 gcttatcatgataagggcttatgtataagctatttctatagaaaaa 402645  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 34632206 - 34632151
Alignment:
Q  61 cttatcatgataattgcttaagtataagctatttctttagaaaaaagataaaattaa 117  Q
    |||||||||||||| |||||  ||||||| |||||| ||| ||||||||||||||||    
T  34632206 cttatcatgataatcgcttatatataagcaatttctatag-aaaaagataaaattaa 34632151  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 34638113 - 34638058
Alignment:
Q  61 cttatcatgataattgcttaagtataagctatttctttagaaaaaagataaaattaa 117  Q
    |||||||||||||  |||||  |||||||||||||| ||| ||||||||||||||||    
T  34638113 cttatcatgataaccgcttatatataagctatttctatag-aaaaagataaaattaa 34638058  T

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Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 35127555 - 35127484
Alignment:
Q  25 gataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    |||||||| | ||||||| |||||| |  |||||  ||||||||||||| |||||| ||||| |||||||||    
T  35127555 gataaacagcttcatttgcagcttataccataagctcttatcatgataagtgcttatgtataggctatttct 35127484  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 41059608 - 41059677
Alignment:
Q  27 taaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    |||||||| | |||||||||||| |  |||||  |||||||||||||||||||| | |||||||||||||    
T  41059608 taaacaacttaatttgtagcttatatgataagcacttatcatgataattgcttatgcataagctatttct 41059677  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 28776855 - 28776960
Alignment:
Q  18 ctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttctttagaaaaaagataaaattaa 117  Q
    |||||| |||||||||| | ||||| |||||| ||  ||||  ||||||||||||| |||||| ||||||||||||| | | | ||||||||||||| ||    
T  28776855 ctgtttggataaacaactt-atttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctatttttattg-aaaaagataaaataaa 28776952  T
Q  118 tttgtttt 125  Q
     |||||||    
T  28776953 gttgtttt 28776960  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 39105363 - 39105421
Alignment:
Q  38 atttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    ||||| |||||| || ||||| ||||||||||||||  ||||| |||||||||||||||    
T  39105363 atttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctatttct 39105421  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 7984877 - 7984944
Alignment:
Q  38 atttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttctttagaaaaa 105  Q
    ||||| |||||| |||| | | ||||||||||||||  ||||| || ||||||| |||||||||||||    
T  7984877 atttgcagcttatagtacatgcgcttatcatgataagcgcttatgtttaagctacttctttagaaaaa 7984944  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20982326 - 20982248
Alignment:
Q  17 cctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    ||||||| |||||||||| |||||    ||||| || ||||| ||||||||| |||| |||||| |||||||||||||||    
T  20982326 cctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcat-ataagtgcttatgtataagctatttct 20982248  T

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Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 42573971 - 42573892
Alignment:
Q  17 cctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    ||||||| |||||||| | | ||||| |||||| ||  | || ||||||||||||||  ||||| |||||||||||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttct 42573892  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 31686634 - 31686558
Alignment:
Q  19 tgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttc 95  Q
    ||||||||||| |||| | ||||| ||| || || ||||| ||||||| |||||| |||||| ||||||||||||||    
T  31686634 tgtttagataatcaacttaatttgcagcatacagcataagcgcttatcgtgataagtgcttatgtataagctatttc 31686558  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 35069430 - 35069525
Alignment:
Q  16 ccctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttctttagaaaaaagataaa 112  Q
    |||||||| |||||||||| | ||||| |||||| || | ||| | |||||||||||| |||||| | ||||||||||| | ||| ||||| |||||    
T  35069430 ccctgttttgataaacaactt-atttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagctatttatatagcaaaaaaataaa 35069525  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 17883947 - 17884042
Alignment:
Q  18 ctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttctttagaaaaaagataaaat 114  Q
    |||||| |||||||||| | |||| ||||||| || |||||| ||||||||| ||| |||| | || |||||||||||| || | ||||||||||||    
T  17883947 ctgtttcgataaacaacttaatttttagcttatagcataaggacttatcatggtaagtgctcatgtgtaagctatttctata-acaaaagataaaat 17884042  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 44589922 - 44589984
Alignment:
Q  25 gataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataag 88  Q
    |||||||||| | ||||| |||||| |||||||| |||||||||||||| |||||| |||||||    
T  44589922 gataaacaacat-atttggagcttatagtataagcgcttatcatgataagtgcttatgtataag 44589984  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15942249 - 15942299
Alignment:
Q  55 taagggcttatcatgataattgcttaagtataagctatttctttagaaaaa 105  Q
    |||| |||||||||||||| |||||| ||||||||||||| | ||||||||    
T  15942249 taagtgcttatcatgataagtgcttatgtataagctatttatatagaaaaa 15942299  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 5894354 - 5894276
Alignment:
Q  17 cctgtttagataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttct 96  Q
    ||||||| |||||||| | | ||||| |||||| || | ||| ||||||||||||||  ||||| |||||||||||||||    
T  5894354 cctgtttggataaacagctt-atttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagctatttct 5894276  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 2840246 - 2840315
Alignment:
Q  26 ataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttc 95  Q
    ||||||||| |  |||| |||||| || ||||| |||||||||||||| |||||| | ||||||||||||    
T  2840246 ataaacaacttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctatttc 2840315  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 2844933 - 2845002
Alignment:
Q  26 ataaacaacctcatttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttc 95  Q
    ||||||||| |  |||| |||||| || ||||| |||||||||||||| |||||| | ||||||||||||    
T  2844933 ataaacaacttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctatttc 2845002  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 2833500 - 2833444
Alignment:
Q  39 tttgtagcttaaagtataagggcttatcatgataattgcttaagtataagctatttc 95  Q
    |||| |||||| || ||||| |||||||||||||| |||||| | ||||||||||||    
T  2833500 tttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctatttc 2833444  T

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