View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-31 (Length: 106)
Name: Solexa-NF5873-31
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-31 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 477603 - 477508
Alignment:
| Q |
8 |
actcatacatgtgactcaagatgcgtacatgagaatgcatgcacacatatttttggaaaatcaatttcattaccattatgcacattctagtttctc |
103 |
Q |
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| T |
477603 |
actcatacatgtgactcaagatgcatacatgagaatgcatgcacacatattcttggaaaatcaatttcattaccattatgcacattctagtttctc |
477508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 482394 - 482361
Alignment:
| Q |
61 |
tggaaaatcaatttcattaccattatgcacattc |
94 |
Q |
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| T |
482394 |
tggaaaatcaatttcattaccattatgcacattc |
482361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 1314904 - 1314862
Alignment:
| Q |
61 |
tggaaaatcaatttcattaccattatgcacattctagtttctc |
103 |
Q |
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|||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
1314904 |
tggaaaatcaatttcattacaattattcacatcctagtttctc |
1314862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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