View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5873-32 (Length: 73)
Name: Solexa-NF5873-32
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 62; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 41228589 - 41228528
Alignment:
| Q |
7 |
atacatgaaagatacgcaaatatatagcggctaatgaggttattgccattaatatacaggat |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41228589 |
atacatgaaagatacgcaaatatatagcggctaatgaggttattgccattaatatacaggat |
41228528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 32643676 - 32643627
Alignment:
| Q |
11 |
atgaaagatacgcaaatatatagcggctaatgaggttattgccattaatataca |
64 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
32643676 |
atgaaagatacgcaaata----gcggctaatgagattattgccattcatataca |
32643627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University